Evidence map›Paper›PMID 34330917›Full record

ArticleNature communications2021

Correlative multi-scale cryo-imaging unveils SARS-CoV-2 assembly and egress.

Luiza Mendonça, Andrew Howe, James B Gilchrist, Yuewen Sheng, Dapeng Sun, Michael L Knight, Laura C Zanetti-Domingues, Benji Bateman, Anna-Sophia Krebs, Long Chen and 10 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed
9.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed, 180 citations in OpenAlex.

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  17. SARS-CoV-2 S assembly into virions facilitated by host ERM proteins.Proceedings of the National Academy of Sciences of the United States of America · 2026
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54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 6 institutions in 2 countries.

Luiza MendonçaDivision of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0002-9210-9139
Andrew HoweDiamond Light Source, Harwell Science and Innovation Campus, Didcot, UK.ORCID http://orcid.org/0000-0003-2187-7672
James B GilchristDiamond Light Source, Harwell Science and Innovation Campus, Didcot, UK.ORCID http://orcid.org/0000-0002-9814-4285
Yuewen ShengDiamond Light Source, Harwell Science and Innovation Campus, Didcot, UK.ORCID http://orcid.org/0000-0003-3067-9520
Dapeng SunDepartment of Structural Biology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.ORCID http://orcid.org/0000-0003-0220-8844
Michael L KnightSir William Dunn School of Pathology, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0002-8780-1630
Laura C Zanetti-DominguesCentral Laser Facility, Science and Technology Facilities Council, Rutherford Appleton Laboratory, Didcot, Oxfordshire, UK.ORCID http://orcid.org/0000-0003-0514-3185
Benji BatemanCentral Laser Facility, Science and Technology Facilities Council, Rutherford Appleton Laboratory, Didcot, Oxfordshire, UK.ORCID http://orcid.org/0000-0003-4580-4662
Anna-Sophia KrebsDivision of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0001-6244-9899
Long ChenDivision of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0001-5595-3026
Julika RadeckeDiamond Light Source, Harwell Science and Innovation Campus, Didcot, UK.ORCID http://orcid.org/0000-0002-5815-5537
Vivian D LiMurray Edwards College, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0002-1923-0231
Tao NiDivision of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0001-7268-0306
Ilias KounatidisDiamond Light Source, Harwell Science and Innovation Campus, Didcot, UK.
Mohamed A KoronfelDiamond Light Source, Harwell Science and Innovation Campus, Didcot, UK.ORCID http://orcid.org/0000-0001-7156-7176
Marta SzynkiewiczCentral Laser Facility, Science and Technology Facilities Council, Rutherford Appleton Laboratory, Didcot, Oxfordshire, UK.
Maria HarkiolakiDiamond Light Source, Harwell Science and Innovation Campus, Didcot, UK.ORCID http://orcid.org/0000-0001-8091-9057
Marisa L Martin-FernandezCentral Laser Facility, Science and Technology Facilities Council, Rutherford Appleton Laboratory, Didcot, Oxfordshire, UK.ORCID http://orcid.org/0000-0001-5496-6300
William JamesSir William Dunn School of Pathology, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0002-2506-1198
Peijun ZhangDivision of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK. peijun.zhang@strubi.ox.ac.uk.ORCID http://orcid.org/0000-0003-1803-691X
Diamond Light Source · GBCentre for Human Genetics · GBRutherford Appleton Laboratory · GBUniversity of Oxford · GBUniversity of Cambridge · GBUniversity of Pittsburgh · US

Funding

X-Ray Core P50GM082251 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CALERO, GUILLERMO ALBERTO · 2007 to 2018
$48.1M
Technology Development 2: MAS NMR and dynamic nuclear polarization for HIV-1 structural biologyP50AI150481 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GRONENBORN, ANGELA M. · 2019 to 2021
$14.1M
Biotechnology and Biological Sciences Research Council BB/M011224/1Biotechnology and Biological Sciences Research Council BB/S003339/1Biotechnology and Biological Sciences Research Council BB/S019553/1Medical Research CouncilNIAID NIH HHS P50 AI150481NIGMS NIH HHS P50 GM082251Wellcome Trust 206422/Z/17/Z
6 · The paper itself

Abstract

Since the outbreak of the SARS-CoV-2 pandemic, there have been intense structural studies on purified viral components and inactivated viruses. However, structural and ultrastructural evidence on how the SARS-CoV-2 infection progresses in the native cellular context is scarce, and there is a lack of comprehensive knowledge on the SARS-CoV-2 replicative cycle. To correlate cytopathic events induced by SARS-CoV-2 with virus replication processes in frozen-hydrated cells, we established a unique multi-modal, multi-scale cryo-correlative platform to image SARS-CoV-2 infection in Vero cells. This platform combines serial cryoFIB/SEM volume imaging and soft X-ray cryo-tomography with cell lamellae-based cryo-electron tomography (cryoET) and subtomogram averaging. Here we report critical SARS-CoV-2 structural events - e.g. viral RNA transport portals, virus assembly intermediates, virus egress pathway, and native virus spike structures, in the context of whole-cell volumes revealing drastic cytppathic changes. This integrated approach allows a holistic view of SARS-CoV-2 infection, from the whole cell to individual molecules.

Indexed as

AnimalsChlorocebus aethiopsCOVID-19Cryoelectron MicroscopyElectron Microscope TomographyHumansPandemicsSARS-CoV-2Vero CellsVirus AssemblyVirus ReleaseVirus Replication

Identifiers

PMID34330917
PMCPMC8324836
OpenAlexW3184428016

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.