Evidence map›Paper›PMID 34330753›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2021

Epigenetic Analysis of the Chromatin Landscape Identifies a Repertoire of Murine Eosinophil-Specific PU.1-Bound Enhancers.

Jennifer M Felton, Sushmitha Vallabh, Sreeja Parameswaran, Lee E Edsall, Kevin Ernst, Benjamin Wronowski, Astha Malik, Michael Kotliar, Matthew T Weirauch, Artem Barski and 2 more

Open access · greenAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Jennifer M FeltonDivision of Allergy and Immunology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH.ORCID 0000-0002-5004-0794
Sushmitha VallabhDivision of Allergy and Immunology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH.ORCID 0000-0002-7470-4903
Sreeja ParameswaranCenter for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH.
Lee E EdsallCenter for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH.ORCID 0000-0002-0326-2829
Kevin ErnstCenter for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH.
Benjamin WronowskiDivision of Allergy and Immunology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH.
Astha MalikDivision of Allergy and Immunology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH.ORCID 0000-0001-6957-8044
Michael KotliarDivision of Allergy and Immunology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH.
Matthew T WeirauchCenter for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH.ORCID 0000-0001-7977-9122
Artem BarskiDivision of Allergy and Immunology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH.ORCID 0000-0002-1861-5316
Patricia C FulkersonDivision of Allergy and Immunology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH.
Marc E RothenbergDivision of Allergy and Immunology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH; marc.rothenberg@cchmc.org.
Cincinnati Children's Hospital Medical Center · US

Funding

Stem Cell/Organoid and Genome Editing CoreP30DK078392 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI Alexander Miethke · 2007 to 2026
$24.4M
Role of Aiolos in eosinophilic AsthmaR01AI130033 · NIAID · CINCINNATI CHILDRENS HOSP MED CTR · PI ROTHENBERG, MARC E. · 2017 to 2021
$2.4M
NIAID NIH HHS R01 AI130033NIDDK NIH HHS P30 DK078392
6 · The paper itself

Abstract

Eosinophils develop in the bone marrow from hematopoietic progenitors into mature cells capable of a plethora of immunomodulatory roles via the choreographed process of eosinophilopoiesis. However, the gene regulatory elements and transcription factors (TFs) orchestrating this process remain largely unknown. The potency and resulting diversity fundamental to an eosinophil's complex immunomodulatory functions and tissue specialization likely result from dynamic epigenetic regulation of the eosinophil genome, a dynamic eosinophil regulome. In this study, we applied a global approach using broad-range, next-generation sequencing to identify a repertoire of eosinophil-specific enhancers. We identified over 8200 active enhancers located within 1-20 kB of expressed eosinophil genes. TF binding motif analysis revealed PU.1 (

Indexed as

AnimalsCells, CulturedChromatinEosinophilsEpigenesis, GeneticMiceMice, Inbred BALB CMyeloid CellsProtein BindingProto-Oncogene ProteinsProto-Oncogene Protein Spi-1Regulatory Sequences, Nucleic AcidTrans-ActivatorsTranscription FactorsChromatinProto-Oncogene ProteinsProto-Oncogene Protein Spi-1Trans-ActivatorsTranscription Factors

Identifiers

PMID34330753
PMCPMC8355082
OpenAlexW3185066250

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.