Evidence map›Paper›PMID 34329581›Full record

ReviewAmerican journal of human genetics2021

Scaling national and international improvement in virtual gene panel curation via a collaborative approach to discordance resolution.

Zornitza Stark, Rebecca E Foulger, Eleanor Williams, Bryony A Thompson, Chirag Patel, Sebastian Lunke, Catherine Snow, Ivone U S Leong, Arina Puzriakova, Louise C Daugherty and 32 more

Abstract readReview
In one paragraph

Review in American journal of human genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

42 authors.

Zornitza StarkAustralian Genomics Health Alliance, Melbourne, VIC 3052, Australia; Victorian Clinical Genetics Services, Murdoch Children's Research Institute, Melbourne, VIC 3052, Australia; University of Melbourne, Melbourne, VIC 3010, Australia. Electronic address: zornitza.stark@vcgs.org.au.
Rebecca E FoulgerGenomics England, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
Eleanor WilliamsGenomics England, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
Bryony A ThompsonUniversity of Melbourne, Melbourne, VIC 3010, Australia; Royal Melbourne Hospital, Melbourne, VIC 3050, Australia.
Chirag PatelGenetic Health Queensland, Royal Brisbane and Women's Hospital, Brisbane, QLD 4006, Australia.
Sebastian LunkeVictorian Clinical Genetics Services, Murdoch Children's Research Institute, Melbourne, VIC 3052, Australia; University of Melbourne, Melbourne, VIC 3010, Australia.
Catherine SnowGenomics England, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
Ivone U S LeongGenomics England, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
Arina PuzriakovaGenomics England, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
Louise C DaughertyGenomics England, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
Sarah LeighGenomics England, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
Christopher BoustredGenomics England, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
Olivia NiblockGenomics England, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
Antonio Rueda-MartinGenomics England, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
Oleg GerasimenkoGenomics England, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
Kevin SavageGenomics England, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
William BellamyGenomics England, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
Victor San Kho LinCentre for Cancer Research, University of Melbourne, Victorian Comprehensive Cancer Centre, Melbourne, VIC 3000, Australia.
Roman VallsCentre for Cancer Research, University of Melbourne, Victorian Comprehensive Cancer Centre, Melbourne, VIC 3000, Australia.
Lavinia GordonCentre for Cancer Research, University of Melbourne, Victorian Comprehensive Cancer Centre, Melbourne, VIC 3000, Australia.
Helen K BrittainGenomics England, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
Ellen R A ThomasGenomics England, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK; Guy's and St Thomas's NHS Trust, London SE1 9RS, UK.
Ana Lisa Taylor TavaresGenomics England, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
Meriel McEntagartGenomics England, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK; St George's University Hospitals NHS Trust, London SW17 0QT, UK.
Susan M WhiteVictorian Clinical Genetics Services, Murdoch Children's Research Institute, Melbourne, VIC 3052, Australia; University of Melbourne, Melbourne, VIC 3010, Australia.
Tiong Y TanVictorian Clinical Genetics Services, Murdoch Children's Research Institute, Melbourne, VIC 3052, Australia; University of Melbourne, Melbourne, VIC 3010, Australia.
Alison YeungVictorian Clinical Genetics Services, Murdoch Children's Research Institute, Melbourne, VIC 3052, Australia; University of Melbourne, Melbourne, VIC 3010, Australia.
Lilian DownieUniversity of Melbourne, Melbourne, VIC 3010, Australia; Murdoch Children's Research Institute, Melbourne, VIC 3052, Australia.
Ivan MaccioccaVictorian Clinical Genetics Services, Murdoch Children's Research Institute, Melbourne, VIC 3052, Australia.
Elena SavvaVictorian Clinical Genetics Services, Murdoch Children's Research Institute, Melbourne, VIC 3052, Australia.
Crystle LeeVictorian Clinical Genetics Services, Murdoch Children's Research Institute, Melbourne, VIC 3052, Australia.
Ain RoesleyVictorian Clinical Genetics Services, Murdoch Children's Research Institute, Melbourne, VIC 3052, Australia.
Paul De FazioVictorian Clinical Genetics Services, Murdoch Children's Research Institute, Melbourne, VIC 3052, Australia.
Jane DellerNational Health Service England and National Health Service Improvement, London SE1 6LH, UK.
Zandra C DeansNational Health Service England and National Health Service Improvement, London SE1 6LH, UK.
Sue L HillNational Health Service England and National Health Service Improvement, London SE1 6LH, UK.
Mark J CaulfieldGenomics England, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
Kathryn N NorthAustralian Genomics Health Alliance, Melbourne, VIC 3052, Australia; University of Melbourne, Melbourne, VIC 3010, Australia; Murdoch Children's Research Institute, Melbourne, VIC 3052, Australia.
Richard H ScottGenomics England, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
Augusto RendonGenomics England, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
Oliver HofmannCentre for Cancer Research, University of Melbourne, Victorian Comprehensive Cancer Centre, Melbourne, VIC 3000, Australia.
Ellen M McDonaghGenomics England, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK; Open Targets and European Molecular Biology Laboratory - European Bioinformatics Institute, Wellcome Genome Campus, Hinxton CB10 1SD, UK.

Funding

Cancer Research UKDepartment of HealthMedical Research Council MC_EX_MR/M009203/1Medical Research Council MC_PC_14089Medical Research Council MR/M009203/1Wellcome Trust
6 · The paper itself

Abstract

Clinical validity assessments of gene-disease associations underpin analysis and reporting in diagnostic genomics, and yet wide variability exists in practice, particularly in use of these assessments for virtual gene panel design and maintenance. Harmonization efforts are hampered by the lack of agreed terminology, agreed gene curation standards, and platforms that can be used to identify and resolve discrepancies at scale. We undertook a systematic comparison of the content of 80 virtual gene panels used in two healthcare systems by multiple diagnostic providers in the United Kingdom and Australia. The process was enabled by a shared curation platform, PanelApp, and resulted in the identification and review of 2,144 discordant gene ratings, demonstrating the utility of sharing structured gene-disease validity assessments and collaborative discordance resolution in establishing national and international consensus.

Indexed as

ConsensusAustraliaBiomarkersData CurationDelivery of Health CareGene ExpressionGene OntologyGenetic Diseases, InbornGenomicsHumansMobile ApplicationsMolecular Sequence AnnotationTerminology as TopicUnited KingdomBiomarkers

Identifiers

PMID34329581
PMCPMC8456155

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.