Evidence map›Paper›PMID 34329319›Full record

ArticlePloS one2021

Genome-wide association study of pancreatic fat: The Multiethnic Cohort Adiposity Phenotype Study.

Samantha A Streicher, Unhee Lim, S Lani Park, Yuqing Li, Xin Sheng, Victor Hom, Lucy Xia, Loreall Pooler, John Shepherd, Lenora W M Loo and 14 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 5 institutions in 1 country.

Samantha A StreicherUniversity of Hawaii Cancer Center, University of Hawaii at Mānoa, Honolulu, Hawaii, United States of America.ORCID 0000-0002-0455-2131
Unhee LimUniversity of Hawaii Cancer Center, University of Hawaii at Mānoa, Honolulu, Hawaii, United States of America.
S Lani ParkUniversity of Hawaii Cancer Center, University of Hawaii at Mānoa, Honolulu, Hawaii, United States of America.
Yuqing LiDepartment of Epidemiology and Biostatistics, University of California - San Francisco, San Francisco, California, United States of America.
Xin ShengCenter for Genetic Epidemiology, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America.
Victor HomCenter for Genetic Epidemiology, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America.
Lucy XiaCenter for Genetic Epidemiology, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America.
Loreall PoolerCenter for Genetic Epidemiology, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America.ORCID 0000-0001-5388-6640
John ShepherdUniversity of Hawaii Cancer Center, University of Hawaii at Mānoa, Honolulu, Hawaii, United States of America.ORCID 0000-0003-2280-2541
Lenora W M LooUniversity of Hawaii Cancer Center, University of Hawaii at Mānoa, Honolulu, Hawaii, United States of America.ORCID 0000-0002-9546-3360
Burcu F DarstCenter for Genetic Epidemiology, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America.
Heather M HighlandDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America.
Linda M PolfusCenter for Genetic Epidemiology, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America.ORCID 0000-0003-1123-2117
David BogumilCenter for Genetic Epidemiology, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America.ORCID 0000-0002-5001-1088
Thomas ErnstUniversity of Maryland School of Medicine, Baltimore, Maryland, United States of America.
Steven BuchthalUniversity of Hawaii Cancer Center, University of Hawaii at Mānoa, Honolulu, Hawaii, United States of America.
Adrian A FrankeUniversity of Hawaii Cancer Center, University of Hawaii at Mānoa, Honolulu, Hawaii, United States of America.
Veronica Wendy SetiawanCenter for Genetic Epidemiology, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America.
Maarit TiirikainenUniversity of Hawaii Cancer Center, University of Hawaii at Mānoa, Honolulu, Hawaii, United States of America.
Lynne R WilkensUniversity of Hawaii Cancer Center, University of Hawaii at Mānoa, Honolulu, Hawaii, United States of America.
Christopher A HaimanCenter for Genetic Epidemiology, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America.
Daniel O StramCenter for Genetic Epidemiology, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America.
Iona ChengDepartment of Epidemiology and Biostatistics, University of California - San Francisco, San Francisco, California, United States of America.
Loïc Le MarchandUniversity of Hawaii Cancer Center, University of Hawaii at Mānoa, Honolulu, Hawaii, United States of America.
University of Hawaiʻi at Mānoa · USUniversity of Southern California · USUniversity of California, San Francisco · USUniversity of Maryland, Baltimore · USUniversity of North Carolina at Chapel Hill · US

Funding

Southern California Clinical and Translational Science InstituteUL1TR001855 · NCATS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Thomas A Buchanan, Michele D. Kipke · 2016 to 2026
$81.3M
University of Hawaii Cancer Center CCSGP30CA071789 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI GERTRAUD MASKARINEC · 1996 to 2026
$56.2M
Understanding Population Differences in Cancer: The MEC StudyU01CA164973 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI HAIMAN, CHRISTOPHER ALAN, LE MARCHAND, LOIC · 2015 to 2025
$37.4M
Southern California Clinical and Translational Science InstituteUL1TR000130 · NCATS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI BUCHANAN, THOMAS A · 2012 to 2015
$36.0M
Recruitment and Data CollectionP01CA168530 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI LE MARCHAND, LOIC · 2012 to 2016
$19.9M
Cardiovascular Epidemiology Training GrantT32HL007055 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Wayne D. Rosamond · 1986 to 2026
$10.0M
PAGE III: Population Architecture using Genomics and EpidemiologyR01HG010297 · NHGRI · RUTGERS, THE STATE UNIV OF N.J. · PI GIGNOUX, CHRISTOPHER R, MATISE, TARA C. · 2019 to 2022
$6.5M
NHGRI EpiGenVar Coordinating CenterU01HG004801 · NHGRI · RUTGERS, THE STATE UNIV OF N.J. · PI MATISE, TARA C. · 2008 to 2012
$4.4M
Genetic Epidemiology of Causal Variants across the Life Course Phase II (CALiCo IU01HG007416 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI NORTH, KARI E. · 2013 to 2017
$3.9M
The Genetic Epidemiology of Heart, Lung, and Blood TraitsTraining Grant (GenHLB)T32HL129982 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Christy Leigh Avery, KAREN L. MOHLKE · 2016 to 2026
$3.8M
Epidemiologic Studies of Putative Functional Variation in Multiethnic CohortU01HG007397 · NHGRI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI HAIMAN, CHRISTOPHER ALAN, LE MARCHAND, LOIC · 2013 to 2017
$3.7M
NHGRI PAGE Coordinating CenterU01HG007419 · NHGRI · RUTGERS, THE STATE UNIV OF N.J. · PI BUYSKE, STEVEN G, MATISE, TARA C. · 2013 to 2017
$3.7M
NCATS NIH HHS UL1 TR000130NCATS NIH HHS UL1 TR001855NCI NIH HHS P01 CA168530NCI NIH HHS P30 CA071789NCI NIH HHS R01 CA209798NCI NIH HHS U01 CA164973NHGRI NIH HHS R01 HG010297NHGRI NIH HHS U01 HG004801NHGRI NIH HHS U01 HG007376NHGRI NIH HHS U01 HG007397NHGRI NIH HHS U01 HG007416NHGRI NIH HHS U01 HG007417NHGRI NIH HHS U01 HG007419NHLBI NIH HHS HHSN268201200008CNHLBI NIH HHS HHSN268201200008INHLBI NIH HHS R01 HL142825NHLBI NIH HHS T32 HL007055NHLBI NIH HHS T32 HL129982
6 · The paper itself

Abstract

Several studies have found associations between higher pancreatic fat content and adverse health outcomes, such as diabetes and the metabolic syndrome, but investigations into the genetic contributions to pancreatic fat are limited. This genome-wide association study, comprised of 804 participants with MRI-assessed pancreatic fat measurements, was conducted in the ethnically diverse Multiethnic Cohort-Adiposity Phenotype Study (MEC-APS). Two genetic variants reaching genome-wide significance, rs73449607 on chromosome 13q21.2 (Beta = -0.67, P = 4.50x10-8) and rs7996760 on chromosome 6q14 (Beta = -0.90, P = 4.91x10-8) were associated with percent pancreatic fat on the log scale. Rs73449607 was most common in the African American population (13%) and rs79967607 was most common in the European American population (6%). Rs73449607 was also associated with lower risk of type 2 diabetes (OR = 0.95, 95% CI = 0.89-1.00, P = 0.047) in the Population Architecture Genomics and Epidemiology (PAGE) Study and the DIAbetes Genetics Replication and Meta-analysis (DIAGRAM), which included substantial numbers of non-European ancestry participants (53,102 cases and 193,679 controls). Rs73449607 is located in an intergenic region between GSX1 and PLUTO, and rs79967607 is in intron 1 of EPM2A. PLUTO, a lncRNA, regulates transcription of an adjacent gene, PDX1, that controls beta-cell function in the mature pancreas, and EPM2A encodes the protein laforin, which plays a critical role in regulating glycogen production. If validated, these variants may suggest a genetic component for pancreatic fat and a common etiologic link between pancreatic fat and type 2 diabetes.

Indexed as

Genome-Wide Association StudyAdiposityAgedChromosomes, Human, Pair 13Chromosomes, Human, Pair 6Diabetes Mellitus, Type 2EthnicityFemaleHumansMagnetic Resonance ImagingMalePancreasPhenotypePolymorphism, Single NucleotideProtein Tyrosine Phosphatases, Non-ReceptorEPM2A protein, humanProtein Tyrosine Phosphatases, Non-Receptor

Identifiers

PMID34329319
PMCPMC8323875
OpenAlexW3183747390

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.