Evidence map›Paper›PMID 34328683›Full record

ArticleAngewandte Chemie (International ed. in English)2021

Discovery and Characterization of Spike N-Terminal Domain-Binding Aptamers for Rapid SARS-CoV-2 Detection.

Nataly Kacherovsky, Lucy F Yang, Ha V Dang, Emmeline L Cheng, Ian I Cardle, Alexandra C Walls, Matthew McCallum, Drew L Sellers, Frank DiMaio, Stephen J Salipante and 3 more

Open access · greenAbstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
7.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 108 citations in OpenAlex.

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  20. Repurposing CRISPR/Cas to Discover SARS-CoV-2 Detecting and Neutralizing Aptamers.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 2 countries.

Nataly KacherovskyDepartment of Bioengineering, University of Washington, Seattle, WA, 98105, USA.
Lucy F YangDepartment of Bioengineering, University of Washington, Seattle, WA, 98105, USA.
Ha V DangDepartment of Biochemistry, University of Washington, Seattle, WA, 98105, USA.
Emmeline L ChengDepartment of Bioengineering, University of Washington, Seattle, WA, 98105, USA.
Ian I CardleDepartment of Bioengineering, University of Washington, Seattle, WA, 98105, USA.
Alexandra C WallsDepartment of Biochemistry, University of Washington, Seattle, WA, 98105, USA.
Matthew McCallumDepartment of Biochemistry, University of Washington, Seattle, WA, 98105, USA.
Drew L SellersDepartment of Bioengineering, University of Washington, Seattle, WA, 98105, USA.
Frank DiMaioDepartment of Biochemistry, University of Washington, Seattle, WA, 98105, USA.
Stephen J SalipanteDepartment of Laboratory Medicine, University of Washington, Seattle, WA, 98105, USA.
Davide CortiHumabs BioMed SA, a subsidiary of, Vir Biotechnology, 6500, Bellinzona, Switzerland.
David VeeslerDepartment of Biochemistry, University of Washington, Seattle, WA, 98105, USA.
Suzie H PunDepartment of Bioengineering, University of Washington, Seattle, WA, 98105, USA.ORCID 0000-0003-1443-4996
University of Washington · USVir Biotechnology (Switzerland) · CH

Funding

RADx-Rad Discoveries & Data: Consortium Coordination Center Program OrganizationU24LM013755 · NLM · YALE UNIVERSITY · PI ARONOFF-SPENCER, ELIAH S, OHNO-MACHADO, LUCILA · 2021 to 2023
$23.3M
Unraveling the bat humoral immune response against zoonotic viruses to guide the design of next-generation therapeuticsDP1AI158186 · NIAID · UNIVERSITY OF WASHINGTON · PI VEESLER, DAVID · 2020 to 2024
$5.4M
Acquisition of a high resolution, high throughput cryo-electron microscopeS10OD023476 · OD · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M · 2017 to 2017
$2.0M
Multimeric Peptide Copolymer Formulations for Targeted Drug Delivery to Treat Nervous System DisordersR01NS118247 · NINDS · UNIVERSITY OF WASHINGTON · PI SELLERS, DREW L · 2020 to 2024
$1.8M
Structural Studies of Coronavirus Fusion ProteinsR01GM120553 · NIGMS · UNIVERSITY OF WASHINGTON · PI VEESLER, DAVID · 2016 to 2020
$1.7M
Touchscreen-compatible, real-time electrochemical sensing of SARS-CoV-2U01AA029316 · NIAAA · UNIVERSITY OF WASHINGTON · PI PUN, SUZIE H., SMITH, JOSHUA R · 2021 to 2022
$922k
national institute of allergy and infectious diseases DP1AI158186NIAAA NIH HHS 1U01AA029316NIAAA NIH HHS U01 AA029316NIAID NIH HHS DP1 AI158186NIAID NIH HHS HHSN272201700059CNIGMS NIH HHS R01Gm120553NIGMS NIH HHS R01 GM120553NIH HHS S10 OD023476NINDS NIH HHS R01 NS118247NLM NIH HHS U24 LM013755
6 · The paper itself

Abstract

The coronavirus disease 2019 (COVID-19) pandemic has devastated families and disrupted healthcare, economies and societies across the globe. Molecular recognition agents that are specific for distinct viral proteins are critical components for rapid diagnostics and targeted therapeutics. In this work, we demonstrate the selection of novel DNA aptamers that bind to the SARS-CoV-2 spike glycoprotein with high specificity and affinity (<80 nM). Through binding assays and high resolution cryo-EM, we demonstrate that SNAP1 (SARS-CoV-2 spike protein N-terminal domain-binding aptamer 1) binds to the S N-terminal domain. We applied SNAP1 in lateral flow assays (LFAs) and ELISAs to detect UV-inactivated SARS-CoV-2 at concentrations as low as 5×10

Indexed as

Aptamers, NucleotideCOVID-19Enzyme-Linked Immunosorbent AssayHumansModels, MolecularSARS-CoV-2Spike Glycoprotein, CoronavirusAptamers, NucleotideSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2aptamerscoronaviruscryo-EMimmunoassaysSARS-CoV-2

Identifiers

PMID34328683
PMCPMC8426805
OpenAlexW3185738448

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.