Evidence map›Paper›PMID 34326830›Full record

ArticleFrontiers in microbiology2021

Genomic Diversity of the Ostreid Herpesvirus Type 1 Across Time and Location and Among Host Species.

Benjamin Morga, Maude Jacquot, Camille Pelletier, Germain Chevignon, Lionel Dégremont, Antoine Biétry, Jean-François Pepin, Serge Heurtebise, Jean-Michel Escoubas, Tim P Bean and 4 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 42 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 4 countries.

Benjamin MorgaIfremer, RBE-SGMM-LGPMM, La Tremblade, France.
Maude JacquotIfremer, RBE-SGMM-LGPMM, La Tremblade, France.
Camille PelletierIfremer, RBE-SGMM-LGPMM, La Tremblade, France.
Germain ChevignonIfremer, RBE-SGMM-LGPMM, La Tremblade, France.
Lionel DégremontIfremer, RBE-SGMM-LGPMM, La Tremblade, France.
Antoine BiétryIfremer, RBE-SGMM-LGPMM, La Tremblade, France.
Jean-François PepinIfremer, ODE-Littoral-Laboratoire Environnement Ressources des Pertuis Charentais (LER-PC), La Tremblade, France.
Serge HeurtebiseIfremer, RBE-SGMM-LGPMM, La Tremblade, France.
Jean-Michel EscoubasIHPE, CNRS, Ifremer, Université de Montpellier - Université de Perpignan Via Domitia, Montpellier, France.
Tim P BeanThe Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian, United Kingdom.
Umberto RosaniDepartment of Biology, University of Padua, Padua, Italy.
Chang-Ming BaiYellow Sea Fisheries Research Institute, CAFS, Qingdao, China.
Tristan RenaultIfremer, RBE, Nantes, France.
Jean-Baptiste LamyIfremer, RBE-SGMM-LGPMM, La Tremblade, France.
Ifremer · FRChinese Academy of Fishery Sciences · CNRoslin Institute · GBUniversité de Perpignan · FRUniversity of Padua · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mechanisms underlying virus emergence are rarely well understood, making the appearance of outbreaks largely unpredictable. This is particularly true for pathogens with low per-site mutation rates, such as DNA viruses, that do not exhibit a large amount of evolutionary change among genetic sequences sampled at different time points. However, whole-genome sequencing can reveal the accumulation of novel genetic variation between samples, promising to render most, if not all, microbial pathogens measurably evolving and suitable for analytical techniques derived from population genetic theory. Here, we aim to assess the measurability of evolution on epidemiological time scales of the Ostreid herpesvirus 1 (OsHV-1), a double stranded DNA virus of which a new variant, OsHV-1 μVar, emerged in France in 2008, spreading across Europe and causing dramatic economic and ecological damage. We performed phylogenetic analyses of heterochronous (

Indexed as

diversitymarine virusmeasurably evolutionOsHV-1shellfish farming

Identifiers

PMID34326830
PMCPMC8313985
OpenAlexW3182164078

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.