Evidence map›Paper›PMID 34326458›Full record

ArticleCommunications biology2021

Rational engineering of ratiometric calcium sensors with bright green and red fluorescent proteins.

Diming Zhang, Emily Redington, Yiyang Gong

Abstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Article
  3. The Somatostatin Pathway Projected from the Basal Forebrain to the Lateral Habenula Promotes Isoflurane Anesthesia Recovery.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2025
    Article
  4. Calcium Imaging in Hypothalamic Cells.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Diming ZhangDepartment of Biomedical Engineering, Duke University, Durham, NC, USA. diming.zhang@duke.edu.ORCID 0000-0001-6256-5638
Emily RedingtonDepartment of Biomedical Engineering, Duke University, Durham, NC, USA.
Yiyang GongDepartment of Biomedical Engineering, Duke University, Durham, NC, USA. yiyang.gong@duke.edu.ORCID 0000-0002-1855-930X

Funding

Voltage Imaging Dissection of the Mammalian CortexDP2NS111505 · NINDS · DUKE UNIVERSITY · PI GONG, YIYANG · 2018 to 2018
$2.4M
Large-scale cellular-resolution voltage imaging of the zebrafish brainUF1NS107678 · NINDS · DUKE UNIVERSITY · PI GONG, YIYANG · 2018 to 2018
$1.2M
NINDS NIH HHS DP2 NS111505NINDS NIH HHS UF1 NS107678
6 · The paper itself

Abstract

Ratiometric genetically encoded calcium indicators (GECIs) record neural activity with high brightness while mitigating motion-induced artifacts. Recently developed ratiometric GECIs primarily employ cyan and yellow-fluorescent fluorescence resonance energy transfer pairs, and thus fall short in some applications that require deep tissue penetration and resistance to photobleaching. We engineered a set of green-red ratiometric calcium sensors that fused two fluorescent proteins and calcium sensing domain within an alternate configuration. The best performing elements of this palette of sensors, Twitch-GR and Twitch-NR, inherited the superior photophysical properties of their constituent fluorescent proteins. These properties enabled our sensors to outperform existing ratiometric calcium sensors in brightness and photobleaching metrics. In turn, the shot-noise limited signal fidelity of our sensors when reporting action potentials in cultured neurons and in the awake behaving mice was higher than the fidelity of existing sensors. Our sensor enabled a regime of imaging that simultaneously captured neural structure and function down to the deep layers of the mouse cortex.

Indexed as

Protein EngineeringCalciumFluorescence Resonance Energy TransferGreen Fluorescent ProteinsIntracellular Calcium-Sensing ProteinsLuminescent ProteinsRed Fluorescent ProteinCalciumGreen Fluorescent ProteinsIntracellular Calcium-Sensing ProteinsLuminescent ProteinsRed Fluorescent Protein

Identifiers

PMID34326458
PMCPMC8322158

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.