Evidence map›Paper›PMID 34326251›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

The p53 transcriptional response across tumor types reveals core and senescence-specific signatures modulated by long noncoding RNAs.

Ephrath Tesfaye, Elena Martinez-Terroba, Jordan Bendor, Lauren Winkler, Christiane Olivero, Kevin Chen, David M Feldser, Jesse R Zamudio, Nadya Dimitrova

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Overexpression ofScience immunology · 2024
    Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Aging and obesity prime the methylome and transcriptome of adipose stem cells for disease and dysfunction.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2023
    Article
  12. Review
  13. Review
  14. Article
  15. A mechanistic view of long noncoding RNAs in cancer.Wiley interdisciplinary reviews. RNA · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Ephrath TesfayeDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06511.
Elena Martinez-TerrobaDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06511.
Jordan BendorDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06511.
Lauren WinklerDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06511.
Christiane OliveroDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06511.
Kevin ChenDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06511.ORCID 0000-0003-3330-8717
David M FeldserDepartment of Cancer Biology, Abramson Family Cancer Research Institute, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104.
Jesse R ZamudioDepartment of Molecular, Cell, and Developmental Biology, University of California, Los Angeles, CA 90095; nadya.dimitrova@yale.edu jesse.zamudio@ucla.edu.
Nadya DimitrovaDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06511; nadya.dimitrova@yale.edu jesse.zamudio@ucla.edu.ORCID 0000-0002-5983-1496
Yale University · USCancer Research Institute · USUniversity of California, Los Angeles · US

Funding

Translational Research Support CoreP30ES013508 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI Rebecca A Simmons · 2006 to 2026
$35.3M
Skill Development for Diverse Scientific Careers: A New Course Predoctoral Program in Cellular and Molecular BiologyT32GM007223 · NIGMS · YALE UNIVERSITY · PI BASERGA, SUSAN J · 1985 to 2019
$31.0M
Roles and mechanisms of cis-regulatory IncRNAs in the p53 tumor suppressor pathwayR37CA230580 · NCI · YALE UNIVERSITY · PI DIMITROVA, NADYA M · 2018 to 2024
$2.5M
NCI NIH HHS R37 CA230580NIEHS NIH HHS P30 ES013508NIGMS NIH HHS T32 GM007223
6 · The paper itself

Abstract

The p53 pathway is a universal tumor suppressor mechanism that limits tumor progression by triggering apoptosis or permanent cell cycle arrest, called senescence. In recent years, efforts to reactivate p53 function in cancer have proven to be a successful therapeutic strategy in murine models and have gained traction with the development of a range of small molecules targeting mutant p53. However, knowledge of the downstream mediators of p53 reactivation in different oncogenic contexts has been limited. Here, we utilized a panel of murine cancer cell lines from three distinct tumor types susceptible to alternative outcomes following p53 restoration to define unique and shared p53 transcriptional signatures. While we found that the majority of p53-bound sites and p53-responsive transcripts are tumor-type specific, analysis of shared targets identified a core signature of genes activated by p53 across all contexts. Furthermore, we identified repression of E2F and Myc target genes as a key feature of senescence. Characterization of p53-induced transcripts revealed core and senescence-specific long noncoding RNAs (lncRNAs) that are predominantly chromatin associated and whose production is coupled to

Indexed as

AnimalsCarcinogenesisCell Line, TumorCell ProliferationCellular SenescenceDNA DamageE2F Transcription FactorsGene Expression Regulation, NeoplasticGenome-Wide Association StudyMiceNeoplasmsProto-Oncogene Proteins c-mycRNA, Long NoncodingSignal TransductionStress, PhysiologicalTumor Suppressor Protein p53E2F Transcription FactorsMyc protein, mouseProto-Oncogene Proteins c-mycPVT1 long-non-coding RNA, mouseRNA, Long NoncodingTumor Suppressor Protein p53lncRNAp53senescencetranscriptiontumor suppression

Identifiers

PMID34326251
PMCPMC8346867
OpenAlexW3186121439

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.