Evidence map›Paper›PMID 34325801›Full record

ReviewMethods in enzymology2021

Analysis of folded structure and folding thermodynamics in heterogeneous-backbone proteomimetics.

Jacqueline R Santhouse, Shilpa R Rao, W Seth Horne

Abstract readReview
In one paragraph

Review in Methods in enzymology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Backbone Modification in a Protein Hydrophobic Core.Chemistry (Weinheim an der Bergstrasse, Germany) · 2024
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Jacqueline R SanthouseDepartment of Chemistry, University of Pittsburgh, Pittsburgh, PA, United States.
Shilpa R RaoDepartment of Chemistry, University of Pittsburgh, Pittsburgh, PA, United States.
W Seth HorneDepartment of Chemistry, University of Pittsburgh, Pittsburgh, PA, United States. Electronic address: horne@pitt.edu.

Funding

Molecular Mimics of Protein Tertiary Folding from Primary Sequence InformationR01GM107161 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HORNE, WILLIAM SETH · 2013 to 2022
$2.6M
NIGMS NIH HHS R01 GM107161
6 · The paper itself

Abstract

Recent years have seen a growing number of examples of designed oligomeric molecules with artificial backbone connectivity that are capable of adopting complex folded tertiary structures analogous to those seen in natural proteins. A range of experimental techniques from structural biology and biophysics have been brought to bear in the study of these proteomimetic agents. Here, we discuss some considerations encountered in the characterization of high-resolution folded structure as well as folding thermodynamics of protein-like artificial backbones. We provide an overview of the use of X-ray crystallography and NMR spectroscopy in such systems and review example applications of these methods in the primary literature. Further, we provide detailed protocols for two experiments that have proved useful in our prior and ongoing efforts to compare folding thermodynamics between natural protein domains and heterogeneous-backbone counterparts.

Indexed as

Protein FoldingProteinsCrystallography, X-RayProtein DomainsProtein Structure, TertiaryThermodynamicsProteinsCircular dichroism spectroscopyIsothermal titration calorimetryNuclear magnetic resonance spectroscopyProtein mimeticsX-ray crystallography

Identifiers

PMID34325801
PMCPMC8392274

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.