Evidence map›Paper›PMID 34324879›Full record

ArticleCell chemical biology2022

DogCatcher allows loop-friendly protein-protein ligation.

Anthony H Keeble, Vikash K Yadav, Matteo P Ferla, Claudia C Bauer, Eulashini Chuntharpursat-Bon, Jin Huang, Robin S Bon, Mark Howarth

Open access · hybridAbstract read
In one paragraph

Article in Cell chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 104 citations in OpenAlex.

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  17. Production of Antibody Fragments Suitable for 1:1, Site-Specific Labeling.Methods in molecular biology (Clifton, N.J.) · 2026
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  20. FETCH enables fluorescent labeling of membrane proteins in vivo with spatiotemporal control inProceedings of the National Academy of Sciences of the United States of America · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Anthony H KeebleDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK.
Vikash K YadavDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK.
Matteo P FerlaDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK.
Claudia C BauerDiscovery and Translational Science Department, Leeds Institute of Cardiovascular and Metabolic Medicine, School of Medicine, University of Leeds, Leeds LS2 9JT, UK.
Eulashini Chuntharpursat-BonDiscovery and Translational Science Department, Leeds Institute of Cardiovascular and Metabolic Medicine, School of Medicine, University of Leeds, Leeds LS2 9JT, UK.
Jin HuangDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK.
Robin S BonDiscovery and Translational Science Department, Leeds Institute of Cardiovascular and Metabolic Medicine, School of Medicine, University of Leeds, Leeds LS2 9JT, UK.
Mark HowarthDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK. Electronic address: mark.howarth@bioch.ox.ac.uk.
University of Oxford · GBUniversity of Leeds · GB

Funding

Biotechnology and Biological Sciences Research Council BB/R000344/1Biotechnology and Biological Sciences Research Council BB/S007369/1British Heart Foundation PG/19/2/34084British Heart Foundation SI/14/1/30718Wellcome TrustWellcome Trust 10044/Z/15/Z
6 · The paper itself

Abstract

There are many efficient ways to connect proteins at termini. However, connecting at a loop is difficult because of lower flexibility and variable environment. Here, we have developed DogCatcher, a protein that forms a spontaneous isopeptide bond with DogTag peptide. DogTag/DogCatcher was generated initially by splitting a Streptococcus pneumoniae adhesin. We optimized DogTag/DogCatcher through rational design and evolution, increasing reaction rate by 250-fold and establishing millimolar solubility of DogCatcher. When fused to a protein terminus, DogTag/DogCatcher reacts slower than SpyTag003/SpyCatcher003. However, inserted in loops of a fluorescent protein or enzyme, DogTag reacts much faster than SpyTag003. Like many membrane proteins, the ion channel TRPC5 has no surface-exposed termini. DogTag in a TRPC5 extracellular loop allowed normal calcium flux and specific covalent labeling on cells in 1 min. DogTag/DogCatcher reacts under diverse conditions, at nanomolar concentrations, and to 98% conversion. Loop-friendly ligation should expand the toolbox for creating protein architectures.

Indexed as

Cells, CulturedEscherichia coliHumansLuminescent ProteinsModels, MolecularOxidoreductasesPeptidesProtein ConformationSolubilityLuminescent ProteinsOxidoreductasesPeptidesbioconjugationchemical biologyepitope tagion channelprotein designprotein engineeringsplit proteinSpyTagsynthetic biologyTRPC

Identifiers

PMID34324879
PMCPMC8878318
OpenAlexW3186097444

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.