Evidence map›Paper›PMID 34324352›Full record

ArticleThe journal of physical chemistry. B2021

Nanoscale Catalyst Chemotaxis Can Drive the Assembly of Functional Pathways.

Charles Kocher, Luca Agozzino, Ken Dill

Open access · greenAbstract read
In one paragraph

Article in The journal of physical chemistry. B, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Origins of Life: The Protein Folding Problem all over again?Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. The prebiotic emergence of biological evolution.Royal Society open science · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Charles KocherLaufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, New York 11794, United States.ORCID 0000-0001-5032-5186
Luca AgozzinoLaufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, New York 11794, United States.
Ken DillLaufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, New York 11794, United States.ORCID 0000-0002-2390-2002
Stony Brook University · US

Funding

MELD: accelerating MD modeling of proteins using Bayesian inferenceR01GM125813 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI DILL, KEN A · 2018 to 2021
$1.3M
NIGMS NIH HHS R01 GM125813
6 · The paper itself

Abstract

Recent experiments demonstrate molecular chemotaxis or altered diffusion rates of enzymes in the presence of their own substrates. We show here an important implication, namely, that if a nanoscale catalyst A produces a small-molecule ligand product L which is the substrate of another catalyst B, the two catalysts will attract each other. We explore this nonequilibrium producer recruitment force (ProRec) in a reaction-diffusion model. The predicted cat-cat association will be the strongest when A is a fast producer of L and B is a tight binder to it. ProRec is a force that could drive a mechanism (the catpath mechanism) by which catalysts could become spatially localized into functional pathways, such as in the biochemical networks in cells, which can achieve complex goals.

Indexed as

ChemotaxisCatalysisDiffusionLigandsLigands

Identifiers

PMID34324352
PMCPMC8366527
OpenAlexW3184180046

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.