Evidence map›Paper›PMID 34322233›Full record

ArticleClinical & translational immunology2021

RNA sequencing identifies global transcriptional changes in peripheral CD4

Melanie A Ruffner, Zhe Zhang, Kelly Maurer, Amanda B Muir, Antonella Cianferoni, Kathleen E Sullivan, Jonathan M Spergel

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in Clinical & translational immunology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT01832324 (Molecular Basis of Food Allergy and Food Tolerance), which is not on this map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01832324 enrolling by invitationnot on this map

Molecular Basis of Food Allergy and Food Tolerance

TypeobservationalSponsorChildren's Hospital of PhiladelphiaRan2011 to 2030Enrolled5,300ConditionsFood Allergy, Eosinophilic Esophagitis
3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Melanie A RuffnerDivision of Allergy and Immunology The Children's Hospital of Philadelphia Philadelphia PA USA.ORCID https://orcid.org/0000-0002-2943-9944
Zhe ZhangDepartment of Biomedical and Health Informatics The Children's Hospital of Philadelphia Philadelphia PA USA.
Kelly MaurerDivision of Allergy and Immunology The Children's Hospital of Philadelphia Philadelphia PA USA.
Amanda B MuirDepartment of Pediatrics The Perelman School of Medicine at University of Pennsylvania Philadelphia PA USA.
Antonella CianferoniDivision of Allergy and Immunology The Children's Hospital of Philadelphia Philadelphia PA USA.
Kathleen E SullivanDivision of Allergy and Immunology The Children's Hospital of Philadelphia Philadelphia PA USA.
Jonathan M SpergelDivision of Allergy and Immunology The Children's Hospital of Philadelphia Philadelphia PA USA.
Children's Hospital of Philadelphia · US

Funding

TRAINING (CAREER DEVELOPMENT) COMPONENTU54AI117804 · NIAID · CINCINNATI CHILDRENS HOSP MED CTR · PI JONATHAN Micheal SPERGEL · 2014 to 2026
$18.5M
Institutional Clinical and Translational Science AwardKL2TR001879 · NCATS · UNIVERSITY OF PENNSYLVANIA · PI MEAGHER, EMMA ANNE · 2016 to 2025
$13.7M
T32 Institutional Pediatric ResearchT32HD043021 · NICHD · CHILDREN'S HOSP OF PHILADELPHIA · PI Joseph W. St. Geme · 2002 to 2026
$6.4M
Epigenetic regulation of esophageal epithelial barrier function in eosinophilic esophagitisK08AI148456 · NIAID · CHILDREN'S HOSP OF PHILADELPHIA · PI RUFFNER, MELANIE A · 2020 to 2024
$927k
Lysyl oxidase mediated fibrosis in eosinophilic esophagitisK08DK106444 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI MUIR, AMANDA BROOKE · 2015 to 2019
$778k
NCATS NIH HHS KL2 TR001879NIAID NIH HHS K08 AI148456NIAID NIH HHS U54 AI117804NICHD NIH HHS T32 HD043021NIDDK NIH HHS K08 DK106444
6 · The paper itself

Abstract

objectiveThere are no disease-modifying therapies for the treatment of eosinophilic oesophagitis (EoE), which is driven by non-IgE-mediated allergic inflammation. A recent clinical trial of milk epicutaneous immunotherapy (EPIT) has shown initial promise, with 47% of treated EoE patients tolerating milk without recurrence of disease. Mechanisms of EPIT in EoE have not been studied in humans. Here, we identify transcriptional changes in the peripheral CD4

methodsRNA isolation, sequencing and integrative data analysis were performed on peripheral CD4

resultsWe identify 244 differentially expressed genes in peripheral blood CD4

conclusionsEoE is associated with distinct global transcriptional changes in CD4

Indexed as

CD4‐positive lymphocyteseosinophilic oesophagitisfood allergyimmunotherapyinterferon responseRNA sequencing

Identifiers

PMID34322233
PMCPMC8296633
OpenAlexW3184107335

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.