ArticleJournal of statistical software2021
SeqNet: An R Package for Generating Gene-Gene Networks and Simulating RNA-Seq Data.
Article in Journal of statistical software, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
9 citing papers in PubMed.
- Generating correlated data for omics simulation.PLoS computational biology · 2025Article
- NJGCG: A node-based joint Gaussian copula graphical model for gene networks inference across multiple states.Computational and structural biotechnology journal · 2024Article
- Clonal distribution and molecular characterization ofMedicine and pharmacy reports · 2024Article
- Evaluation of network-guided random forest for disease gene discovery.BioData mining · 2024Article
- Differential network connectivity analysis for microbiome data adjusted for clinical covariates using jackknife pseudo-values.BMC bioinformatics · 2024Article
- Gene loss during a transition to multicellularity.Scientific reports · 2023Article
- A pseudo-value regression approach for differential network analysis of co-expression data.BMC bioinformatics · 2023Article
- Inferring cancer common and specific gene networks via multi-layer joint graphical model.Computational and structural biotechnology journal · 2023Article
- Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors.
Funding
Abstract
Gene expression data provide an abundant resource for inferring connections in gene regulatory networks. While methodologies developed for this task have shown success, a challenge remains in comparing the performance among methods. Gold-standard datasets are scarce and limited in use. And while tools for simulating expression data are available, they are not designed to resemble the data obtained from RNA-seq experiments. SeqNet is an R package that provides tools for generating a rich variety of gene network structures and simulating RNA-seq data from them. This produces
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.