Evidence map›Paper›PMID 34321485›Full record

ArticleScientific data2021

309 metagenome assembled microbial genomes from deep sediment samples in the Gulfs of Kathiawar Peninsula.

Neelam M Nathani, Kaushambee J Dave, Priyanka P Vatsa, Mayur S Mahajan, Parth Sharma, Chandrashekar Mootapally

Erratum issuedAbstract readDataset
In one paragraph

Article in Scientific data, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Neelam M NathaniDepartment of Life Sciences, Maharaja Krishnakumarsinhji Bhavnagar University, Bhavnagar, 364001, Gujarat, India.ORCID http://orcid.org/0000-0002-5822-0036
Kaushambee J DaveDepartment of Molecular Cell Biology and Immunology, University of Tübingen, Geschwister-Scholl-Platz, 72074, Tübingen, Germany.ORCID http://orcid.org/0000-0002-5070-3367
Priyanka P VatsaDepartment of Biotechnology, National Institute of Pharmaceutical Education and Research (NIPER), Gandhinagar, 382355, Gujarat, India.ORCID http://orcid.org/0000-0002-0739-5653
Mayur S MahajanMicrobiology Division, Regional Centre, Lokhandwala Road, Four Bungalows, Andheri (West), CSIR - National Institute of Oceanography (CSIR-NIO), Mumbai, 400053, Maharashtra, India.ORCID http://orcid.org/0000-0001-8355-7346
Chandrashekar MootapallyDepartment of Marine Science, Maharaja Krishnakumarsinhji Bhavnagar University, Bhavnagar, 364001, Gujarat, India. chandu.avi@gmail.com.ORCID http://orcid.org/0000-0002-1224-362X

Funding

DST | Science and Engineering Research Board (SERB) PDF/2016/000190DST | Science and Engineering Research Board (SERB) PDF/2016/001239
6 · The paper itself

Abstract

Prokaryoplankton genomes from the deep marine sediments are less explored compared to shallow shore sediments. The Gulfs of Kathiawar peninsula experience varied currents and inputs from different on-shore activities. Any perturbations would directly influence the microbiome and their normal homeostasis. Advancements in reconstructing genomes from metagenomes allows us to understand the role of individual unculturable microbes in ecological niches like the Gulf sediments. Here, we report 309 bacterial and archaeal genomes assembled from metagenomics data of deep sediments from sites in the Gulf of Khambhat and Gulf of Kutch as well as a sample from the Arabian Sea. Phylogenomics classified them into 5 archaeal and 18 bacterial phyla. The genomes will facilitate understanding of the physiology, adaptation and impact of on-shore anthropogenic activities on the deep sediment microbes.

Indexed as

Genome, MicrobialMetagenomeAnthropogenic EffectsArchaeaBacteriaGeologic SedimentsIndiaPhylogenySeawater

Identifiers

PMID34321485
PMCPMC8319310

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.