Evidence map›Paper›PMID 34321367›Full record

ArticleMicrobes and environments2021

Comparative Genome Analysis Reveals Differences in Biocontrol Efficacy According to Each Individual Isolate Belonging to Rhizospheric Fluorescent Pseudomonads.

Ryohei Sakuraoka, Nobutaka Someya, Kasumi Takeuchi, Tomohiro Suzuki, Tomohiro Morohoshi

Open access · diamondAbstract read
In one paragraph

Article in Microbes and environments, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Ryohei SakuraokaDepartment of Innovation Systems Engineering, Graduate School of Engineering, Utsunomiya University.
Nobutaka SomeyaInstitute for Plant Protection, National Agriculture and Food Research Organization (NARO).
Kasumi TakeuchiInstitute of Agrobiological Sciences, NARO.
Tomohiro SuzukiCenter for Bioscience Research and Education, Utsunomiya University.
Tomohiro MorohoshiDepartment of Innovation Systems Engineering, Graduate School of Engineering, Utsunomiya University.
Utsunomiya University · JPInstitute of Agrobiological Sciences · JPNational Agriculture and Food Research Organization · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biocontrol fluorescent pseudomonads produce a number of antibiotic organic compounds, including 2,4-diacetylphloroglucinol, pyoluteorin, pyrrolnitrin, and phenazine. We previously classified rhizospheric fluorescent pseudomonads harboring antibiotic biosynthetic gene clusters into 10 operational taxonomic units (OTUs). In the present study, we report the complete genome sequences of selected strains from these OTUs. The genetic diversity of antibiotic biosynthetic gene clusters and their surrounding sequences correlated with the OTU classification. In comparisons of the biocontrol activity and distribution of antibiotic biosynthetic gene clusters, we found that the pyrrolnitrin biosynthetic gene cluster more effectively controlled the growth of Rhizoctonia solani.

Indexed as

Genome, BacterialAnti-Bacterial AgentsBacterial ProteinsMultigene FamilyPseudomonas fluorescensRhizoctoniaSoil MicrobiologyAnti-Bacterial AgentsBacterial Proteinsantibioticbiocontrolcomparative genome analysiscomplete genome sequencingfluorescent pseudomonads

Identifiers

PMID34321367
PMCPMC8446755
OpenAlexW3183444369

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.