Evidence map›Paper›PMID 34320248›Full record

ArticleBiometrical journal. Biometrische Zeitschrift2021

Adaptive local false discovery rate procedures for highly spiky data and their application RNA sequencing data of yeast SET4 deletion mutants.

Mark Louie Ramos, DoHwan Park, Johan Lim, Junyong Park, Khoa Tran, Eric Joshua Garcia, Erin Green

Open access · greenAbstract read
In one paragraph

Article in Biometrical journal. Biometrische Zeitschrift, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.1field-weighted citation impact, top 56% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 3 countries.

Mark Louie RamosDepartment of Mathematics and Statistics, University of Maryland, Baltimore County, Baltimore, MD, USA.
DoHwan ParkDepartment of Mathematics and Statistics, University of Maryland, Baltimore County, Baltimore, MD, USA.ORCID 0000-0002-9132-5040
Johan LimDepartment of Statistics, Seoul National University, Seoul, South Korea.
Junyong ParkDepartment of Statistics, Seoul National University, Seoul, South Korea.
Khoa TranDepartment of Biological Sciences, University of Maryland, Baltimore County, Baltimore, MD, USA.
Eric Joshua GarciaDepartment of Biological Sciences, University of Maryland, Baltimore County, Baltimore, MD, USA.
Erin GreenDepartment of Biological Sciences, University of Maryland, Baltimore County, Baltimore, MD, USA.
University of Maryland, Baltimore County · USSeoul National University · KR

Funding

Lysine methylation at chromatin and cellular responses to stressR01GM124342 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE COUNTY · PI GREEN, ERIN · 2017 to 2021
$1.5M
National Institute of Health NIH-R01GM124342NIGMS NIH HHS R01 GM124342
6 · The paper itself

Abstract

Chromatin dynamics are central to the regulation of gene expression and genome stability. In order to improve understanding of the factors regulating chromatin dynamics, the genes encoding these factors are deleted and the differential gene expression profiles are determined using approaches such as RNA sequencing. Here, we analyzed a gene expression dataset aimed at uncovering the function of the relatively uncharacterized chromatin regulator, Set4, in the model system Saccharomyces cerevisiae (budding yeast). The main theme of this paper focuses on identifying the highly differentially expressed genes in cells deleted for Set4 (referred to as Set4

Indexed as

RNASaccharomyces cerevisiaeGene Expression ProfilingSequence Analysis, RNARNAempirical approximationfalse discovery ratemixture of normalmultiple testing

Identifiers

PMID34320248
PMCPMC10723184
OpenAlexW3186185370

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.