Evidence map›Paper›PMID 34319784›Full record

ArticleJournal of virology2021

Kinetic Multi-omic Analysis of Responses to SARS-CoV-2 Infection in a Model of Severe COVID-19.

Angelene M Cantwell, Harinder Singh, Maryann Platt, Yanbao Yu, Yi-Han Lin, Yuji Ikeno, Gene Hubbard, Yan Xiang, Norberto Gonzalez-Juarbe, Peter H Dube

Open access · hybridAbstract read
In one paragraph

Article in Journal of virology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.6field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Sex differences in the cardiac stress response following SARS-CoV-2 infection of ferrets.American journal of physiology. Heart and circulatory physiology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Angelene M Cantwell *Department of Microbiology, Immunology, and Molecular Genetics, UT-Health San Antonio, San Antonio, Texas, USA.
Harinder Singh *Infectious Disease and Genomic Medicine Group, J. Craig Venter Institutegrid.469946.0, Rockville, Maryland, USA.
Maryann PlattInfectious Disease and Genomic Medicine Group, J. Craig Venter Institutegrid.469946.0, Rockville, Maryland, USA.
Yanbao YuInfectious Disease and Genomic Medicine Group, J. Craig Venter Institutegrid.469946.0, Rockville, Maryland, USA.ORCID 0000-0003-2994-1974
Yi-Han LinInfectious Disease and Genomic Medicine Group, J. Craig Venter Institutegrid.469946.0, Rockville, Maryland, USA.
Yuji IkenoBarshop Institute for Longevity and Aging Studies, UT-Health San Antonio, San Antonio, Texas, USA.
Gene HubbardBarshop Institute for Longevity and Aging Studies, UT-Health San Antonio, San Antonio, Texas, USA.
Yan XiangDepartment of Microbiology, Immunology, and Molecular Genetics, UT-Health San Antonio, San Antonio, Texas, USA.ORCID 0000-0002-7633-1629
Norberto Gonzalez-JuarbeInfectious Disease and Genomic Medicine Group, J. Craig Venter Institutegrid.469946.0, Rockville, Maryland, USA.
Peter H DubeDepartment of Microbiology, Immunology, and Molecular Genetics, UT-Health San Antonio, San Antonio, Texas, USA.ORCID 0000-0002-8755-3737
J. Craig Venter Institute · USThe University of Texas Health Science Center at San Antonio · US

Funding

TISSUE CULTURE---COREP30CA054174 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Robin Jean Leach · 1991 to 2026
$59.1M
TRANSGENIC COREP30AG013319 · NIA · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI JAMES FLOYD NELSON · 1995 to 2026
$30.6M
Targeting Cellular Senescence to Extend HealthspanP01AG062413 · NIA · MAYO CLINIC ROCHESTER · PI Sundeep Khosla, Nathan K LeBrasseur · 2019 to 2026
$28.7M
Institute for Integration of Medicine & Science: A Partnership to Improve HealthUM1TR004538 · NCATS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI ROBERT A CLARK, Kenneth M Hargreaves · 2023 to 2026
$22.3M
Institute for Integration of Medicine & Science: A Partnership to Improve HealthUL1TR002645 · NCATS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI CLARK, ROBERT A, HARGREAVES, KENNETH M · 2018 to 2022
$20.4M
Reduced thioredoxin in both the cytosol and mitochondria: a key modulator of age-related cancer development in Trx1KO x Trx2KO mice?R01AG070034 · NIA · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI IKENO, YUJI · 2021 to 2025
$2.0M
High Throughput DNA Sequencer: Illumina HiSeq 3000 SequencerS10OD021805 · OD · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LAI, ZHAO · 2016 to 2016
$600k
Development of novel protein-based vaccine formulations to prevent pneumococcal colonization and diseaseR21AI148722 · NIAID · J. CRAIG VENTER INSTITUTE, INC. · PI GONZALEZ-JUARBE, NORBERTO · 2020 to 2021
$542k
Mechanisms by which Cu/ZnSOD overexpression improves metabolic health in ratsR56AG057785 · NIA · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI IKENO, YUJI · 2018 to 2018
$460k
BLRD VA I01 BX001023HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) AI148722-01HHS | NIH | National Institute on Aging (NIA) P30-AG013319NCATS NIH HHS UL1 TR002645NCATS NIH HHS UM1 TR004538NCI NIH HHS P30 CA054174NIAID NIH HHS R21 AI148722NIA NIH HHS P01 AG062413NIA NIH HHS P30 AG013319NIA NIH HHS R01 AG070034NIA NIH HHS R56 AG057785NIH HHS S10 OD021805
6 · The paper itself

Abstract

The host response to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is poorly understood due to a lack of an animal model that recapitulates severe human disease. Here, we report a Syrian hamster model that develops progressive lethal pulmonary disease that closely mimics severe coronavirus disease 2019 (COVID-19). We evaluated host responses using a multi-omic, multiorgan approach to define proteome, phosphoproteome, and transcriptome changes. These data revealed both type I and type II interferon-stimulated gene and protein expression along with a progressive increase in chemokines, monocytes, and neutrophil-associated molecules throughout the course of infection that peaked in the later time points correlating with a rapidly developing diffuse alveolar destruction and pneumonia that persisted in the absence of active viral infection. Extrapulmonary proteome and phosphoproteome remodeling was detected in the heart and kidneys following viral infection. Together, our results provide a kinetic overview of multiorgan host responses to severe SARS-CoV-2 infection

Indexed as

Immunity, InnateProteomeTranscriptomeAnimalsCOVID-19Disease Models, AnimalGene OntologyHeartKidneyLungMaleMesocricetusMyocardiumPhosphoproteinsProteomicsSARS-CoV-2PhosphoproteinsProteomeCOVID-19hamsterphosphoproteomicsproteomicsRNA-seqSARS-CoV-2

Identifiers

PMID34319784
PMCPMC8475517
OpenAlexW3183549280

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.