Evidence map›Paper›PMID 34316015›Full record

ArticleCommunications biology2021

Structures of the ApoL1 and ApoL2 N-terminal domains reveal a non-classical four-helix bundle motif.

Mark Ultsch, Michael J Holliday, Stefan Gerhardy, Paul Moran, Suzie J Scales, Nidhi Gupta, Francesca Oltrabella, Cecilia Chiu, Wayne Fairbrother, Charles Eigenbrot and 1 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Apolipoproteins L involvement in immunity.Journal of human immunity · 2026
    Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. The Janus-faced functions of Apolipoproteins L in membrane dynamics.Cellular and molecular life sciences : CMLS · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Mark UltschDepartment of Structural Biology, Genentech Inc., South San Francisco, CA, USA.
Michael J HollidayDepartment of Early Discovery Biochemistry, Genentech Inc., South San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-1112-9892
Stefan GerhardyDepartment of Early Discovery Biochemistry, Genentech Inc., South San Francisco, CA, USA.
Paul MoranDepartment of Early Discovery Biochemistry, Genentech Inc., South San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-8159-2882
Suzie J ScalesDepartment of Immunology, Genentech Inc., South San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-2544-0283
Nidhi GuptaDepartment of Immunology, Genentech Inc., South San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-8540-9504
Francesca OltrabellaDepartment of Immunology, Genentech Inc., South San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-0353-8968
Cecilia ChiuDepartment of Antibody Engineering, Genentech Inc., South San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-8797-9984
Wayne FairbrotherDepartment of Early Discovery Biochemistry, Genentech Inc., South San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-0480-5124
Charles EigenbrotDepartment of Structural Biology, Genentech Inc., South San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-8936-6302
Daniel KirchhoferDepartment of Early Discovery Biochemistry, Genentech Inc., South San Francisco, CA, USA. dak@gene.com.ORCID http://orcid.org/0000-0002-0975-4402
Gene Therapy Laboratory · FR

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
NIGMS NIH HHS P41 GM103393
6 · The paper itself

Abstract

Apolipoprotein L1 (ApoL1) is a circulating innate immunity protein protecting against trypanosome infection. However, two ApoL1 coding variants are associated with a highly increased risk of chronic kidney disease. Here we present X-ray and NMR structures of the N-terminal domain (NTD) of ApoL1 and of its closest relative ApoL2. In both proteins, four of the five NTD helices form a four-helix core structure which is different from the classical four-helix bundle and from the pore-forming domain of colicin A. The reactivity with a conformation-specific antibody and structural models predict that this four-helix motif is also present in the NTDs of ApoL3 and ApoL4, suggesting related functions within the small ApoL family. The long helix 5 of ApoL1 is conformationally flexible and contains the BH3-like region. This BH3-like α-helix resembles true BH3 domains only in sequence and structure but not in function, since it does not bind to the pro-survival members of the Bcl-2 family, suggesting a Bcl-2-independent role in cytotoxicity. These findings should expedite a more comprehensive structural and functional understanding of the ApoL immune protein family.

Indexed as

Protein DomainsApolipoprotein L1Apolipoproteins LHumansAPOL1 protein, humanAPOL2 protein, humanApolipoprotein L1Apolipoproteins L

Identifiers

PMID34316015
PMCPMC8316464
OpenAlexW3185623918

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.