Evidence map›Paper›PMID 34315526›Full record

ArticleBMC research notes2021

Characterization of genomic DNA sequence of the candidate gene for FB_Mfu10 associated with fire blight resistance in Malus species.

Ofere Francis Emeriewen, Henryk Flachowsky, Andreas Peil

Open access · goldAbstract read
In one paragraph

Article in BMC research notes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
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  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ofere Francis EmeriewenJulius Kühn-Institut (JKI), Federal Research Centre for Cultivated Plants, Institute for Breeding Research On Fruit Crops, Dresden, Germany. ofere.emeriewen@julius-kuehn.de.ORCID http://orcid.org/0000-0002-8231-0189
Henryk FlachowskyJulius Kühn-Institut (JKI), Federal Research Centre for Cultivated Plants, Institute for Breeding Research On Fruit Crops, Dresden, Germany.
Andreas PeilJulius Kühn-Institut (JKI), Federal Research Centre for Cultivated Plants, Institute for Breeding Research On Fruit Crops, Dresden, Germany.
Julius Kühn-Institut · DE

Funding

Deutsche Forschungsgemeinschaft AOBJ 661177
6 · The paper itself

Abstract

objectiveThe proposed candidate gene underlying the Malus fusca fire blight resistance locus on chromosome 10 was previously predicted to possess 880 amino acids and 8 exons. Eight base pair (8 bp) insertion/deletion in the first exon potentially distinguished resistant genotypes from susceptible ones. This study aimed at analyzing the candidate gene sequence in another set of original resistant and susceptible progeny, characterizing the sequence in a transgenic line transformed with the candidate gene under its own native promoter, as well as deciphering the potential genomic differences between this candidate gene and its homolog in the 'Golden Delicious' doubled haploid genome (GDDH13).

resultsSequences of amplicons of part of the candidate gene amplified in two progenies that showed resistant and susceptible fire blight phenotypes, confirmed the 8 bp insertion that distinguishes susceptible and resistant progenies. The transgenic line was positive for the candidate gene sequence, confirming a successful transfer into the background of apple cultivar 'Pinova', and possessed the same genomic sequence as the progeny with a resistant phenotype. Sequence analysis showed that the homolog gene on GDDH13 possesses a significant 18 bp deletion in exon 1 leading to a difference of 15 amino acid from the protein sequence of the candidate gene.

Indexed as

MalusBase SequenceDisease ResistanceGenomicsPlant DiseasesFB_Mfu10MAL0045Malus fusca fire blight resistance locusMfu10

Identifiers

PMID34315526
PMCPMC8314441
OpenAlexW3184488013

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.