Evidence map›Paper›PMID 34313991›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2021

Integration of Genomic and Transcriptomic Data to Elucidate Molecular Processes in Babesia divergens.

Luis Miguel Gonzalez, Elena Sevilla, Miguel Fernández-García, Alejandro Sanchez-Flores, Estrella Montero

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Luis Miguel GonzalezLaboratorio de Referencia e Investigación en Parasitología, Centro Nacional de Microbiología, ISCIII Majadahonda, Madrid, Spain.
Elena SevillaLaboratorio de Referencia e Investigación en Parasitología, Centro Nacional de Microbiología, ISCIII Majadahonda, Madrid, Spain.
Miguel Fernández-GarcíaCentro de Metabolómica y Bioanálisis (CEMBIO), Facultad de Farmacia, Universidad San Pablo-CEU, CEU Universities, Boadilla del Monte, Spain.
Alejandro Sanchez-Flores *Unidad Universitaria de Secuenciación Masiva y Bioinformática, Instituto de Biotecnología, Cuernavaca, Mexico. alejandro.sanchez@ibt.unam.mx.
Estrella Montero *Laboratorio de Referencia e Investigación en Parasitología, Centro Nacional de Microbiología, ISCIII Majadahonda, Madrid, Spain. estrella.montero@isciii.es.
Centro Nacional de Microbiologia · ESInstituto de Salud Carlos III · ESUniversidad San Pablo CEU · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Emerging pathogens have developed ingenious life cycles to facilitate their growth and survival in the host organism. Detailed knowledge of the life cycle of these pathogens is increasingly necessary if we are to design new strategies to prevent infection and transmission. Multi-omics platforms provide useful data at different biological levels, and integration of these data into current approaches can facilitate holistic assessment of emerging pathogens. In this chapter, we bring together various methods and apply an integrative approach for analysis of genomic and transcriptomic data in Babesia divergens, an Apicomplexa emerging parasite that invades red blood cells and causes redwater fever in cattle and the most severe form of babesiosis in humans in Europe. The integrative methodology described herein can be helpful to identify genes active at specific points during life cycle of Apicomplexa parasites.

Indexed as

BabesiaBabesiosisCattle DiseasesAnimalsCattleGenomicsLife Cycle StagesTranscriptomeApicomplexa parasitesBabesia divergensGene expressionGenomic and transcriptomic integrationPathway analysisScript development

Identifiers

PMID34313991
OpenAlexW3186426119

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.