Evidence map›Paper›PMID 34313859›Full record

ArticleArchives of virology2021

A second capsidless hadakavirus strain with 10 positive-sense single-stranded RNA genomic segments from Fusarium nygamai.

Haris Ahmed Khan, Yukiyo Sato, Hideki Kondo, Atif Jamal, Muhammad Faraz Bhatti, Nobuhiro Suzuki

Abstract read
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Article in Archives of virology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Determination of the Mycovirome of a Necrotrophic Fungus.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  8. Review
  9. Functional annotation and comparative analysis of fourSaudi journal of biological sciences · 2023
    Article
  10. Article
  11. ICTV Virus Taxonomy Profile:The Journal of general virology · 2023
    Article
  12. Article
  13. Infection ofViruses · 2022
    Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Haris Ahmed Khan *Atta-ur-Rahman School of Applied Biosciences (ASAB), National University of Sciences and Technology (NUST), H-12, Islamabad, 44000, Pakistan.
Yukiyo Sato *Institute of Plant Science and Resources, Okayama University, Kurashiki, 710-0046, Japan.
Hideki KondoInstitute of Plant Science and Resources, Okayama University, Kurashiki, 710-0046, Japan.
Atif JamalCrop Diseases Research Institute, National Agricultural Research Centre, Islamabad, Pakistan.
Muhammad Faraz BhattiAtta-ur-Rahman School of Applied Biosciences (ASAB), National University of Sciences and Technology (NUST), H-12, Islamabad, 44000, Pakistan. mfbhatti@asab.nust.edu.pk.
Nobuhiro SuzukiInstitute of Plant Science and Resources, Okayama University, Kurashiki, 710-0046, Japan. nsuzuki@okayama.u-ac.jp.ORCID http://orcid.org/0000-0003-0097-9856

Funding

Japan Society for the Promotion of Science 17H01463, 15K14663, 16H06436, 16H06429,16K21723Ohara Foundation for Agriculture Research 2020Yomogi Inc. 2019
6 · The paper itself

Abstract

A unique capsidless virus with a positive-sense, single-stranded RNA genome (hadakavirus 1, HadV1), a member of the extended picorna-like supergroup, was isolated previously from the phytopathogenic fungus Fusarium oxysporum. Here, we describe the molecular and biological characterisation of a second hadakavirus strain from Fusarium nygamai, which has not been investigated in detail previously as a virus host. This virus, hadakavirus 1 strain 1NL (HadV1-1NL), has features similar to the first hadakavirus, HadV1-7n, despite having a different number of segments (10 for HadV1-1NL vs. 11 for HadV1-7n). The 10 genomic RNA segments of HadV1-1NL range in size from 0.9 kb to 2.5 kb. All HadV1-1NL segments show 67% to 86% local nucleotide sequence identity to their HadV1-7n counterparts, whereas HadV1-1NL has no homolog of HadV1-7n RNA8, which encodes a zinc-finger motif. Another interesting feature is the possible coding incapability of HadV1-1NL RNA10. HadV1-1NL was predicted to be capsidless based on the RNase A susceptibility of its replicative form dsRNA. Phenotypic comparison of multiple virus-infected and virus-free single-spore isolates indicated asymptomatic infection by HadV1-1NL. Less-efficient vertical transmission via spores was observed as the infected fungal colonies from which the spores were derived became older, as was observed for HadV1-7n. This study shows a second example of a hadakavirus that appears to have unusual features.

Indexed as

Fungal VirusesFusariumGenome, ViralPhylogenyPlant DiseasesPositive-Strand RNA VirusesRibonucleasesRNA, Double-StrandedRNA, ViralSequence Analysis, DNASpecies SpecificitySpores, FungalViral ProteinsRibonucleasesRNA, Double-StrandedRNA, ViralViral Proteins

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.