Evidence map›Paper›PMID 34312393›Full record

ArticleNature communications2021

9-Cyanopyronin probe palette for super-multiplexed vibrational imaging.

Yupeng Miao, Naixin Qian, Lixue Shi, Fanghao Hu, Wei Min

Abstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Review
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  8. Raman imaging of molecular groups in the wavenumber silent region.Analytical and bioanalytical chemistry · 2026
    Review
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  18. Non-Mass Spectrometric Targeted Single-Cell Metabolomics.Trends in analytical chemistry : TRAC · 2023
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yupeng MiaoDepartment of Chemistry, Columbia University, New York, NY, USA.ORCID 0000-0002-7365-4828
Naixin QianDepartment of Chemistry, Columbia University, New York, NY, USA.
Lixue ShiDepartment of Chemistry, Columbia University, New York, NY, USA.ORCID 0000-0001-9712-5800
Fanghao HuDepartment of Chemistry, Columbia University, New York, NY, USA.
Wei MinDepartment of Chemistry, Columbia University, New York, NY, USA. wm2256@columbia.edu.ORCID 0000-0003-2570-3557

Funding

Super-multiplex vibrational imaging in living cellsR01GM128214 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI MIN, WEI · 2018 to 2021
$1.5M
Ultrahigh-resolution and single-molecule stimulated Raman scattering (SRS) microscopyR01GM132860 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI MIN, WEI · 2019 to 2022
$1.3M
NIGMS NIH HHS R01 GM128214NIGMS NIH HHS R01 GM132860
6 · The paper itself

Abstract

Multiplexed optical imaging provides holistic visualization on a vast number of molecular targets, which has become increasingly essential for understanding complex biological processes and interactions. Vibrational microscopy has great potential owing to the sharp linewidth of vibrational spectra. In 2017, we demonstrated the coupling between electronic pre-resonant stimulated Raman scattering (epr-SRS) microscopy with a proposed library of 9-cyanopyronin-based dyes, named Manhattan Raman Scattering (MARS). Herein, we develop robust synthetic methodology to build MARS probes with different core atoms, expansion ring numbers, and stable isotope substitutions. We discover a predictive model to correlate their vibrational frequencies with structures, which guides rational design of MARS dyes with desirable Raman shifts. An expanded library of MARS probes with diverse functionalities is constructed. When coupled with epr-SRS microscopy, these MARS probes allow us to demonstrate not only many versatile labeling modalities but also increased multiplexing capacity. Hence, this work opens up next-generation vibrational imaging with greater utilities.

Indexed as

Coloring AgentsHeLa CellsHumansModels, ChemicalMolecular ProbesMolecular StructureNonlinear Optical MicroscopyOptical ImagingPyronineSpectrum Analysis, RamanVibrationColoring AgentsMolecular ProbesPyroninepyronine B

Identifiers

PMID34312393
PMCPMC8313527

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.