Evidence map›Paper›PMID 34311721›Full record

ArticleBMC oral health2021

Genome-Wide Association Study (GWAS) of dental caries in diverse populations.

Rasha N Alotaibi, Brian J Howe, Jonathan M Chernus, Nandita Mukhopadhyay, Carla Sanchez, Frederic W B Deleyiannis, Katherine Neiswanger, Carmencita Padilla, Fernando A Poletta, Ieda M Orioli and 9 more

Open access · goldAbstract read
In one paragraph

Article in BMC oral health, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 40 citations in OpenAlex.

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  7. International journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 9 institutions in 5 countries.

Rasha N AlotaibiDepartment of Oral and Craniofacial Sciences, School of Dental Medicine, University of Pittsburgh, Pittsburgh, PA, USA. rnasha@ksu.edu.sa.
Brian J HoweDepartment of Family Dentistry, College of Dentistry, University of Iowa, Iowa City, IA, USA.
Jonathan M ChernusDepartment of Oral and Craniofacial Sciences, School of Dental Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Nandita MukhopadhyayDepartment of Oral and Craniofacial Sciences, School of Dental Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Carla SanchezDepartment of Oral and Craniofacial Sciences, School of Dental Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Frederic W B DeleyiannisUC Health Medical Group, Colorado Springs, Denver, CO, USA.
Katherine NeiswangerDepartment of Oral and Craniofacial Sciences, School of Dental Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Carmencita PadillaDepartment of Pediatrics, College of Medicine, University of the Philippines, Manila, Philippines.
Fernando A PolettaECLAMC/INAGEMP At Center for Medical Education and Clinical Research (CEMIC-CONICET), Buenos Aires, Argentina.
Ieda M OrioliDepartment of Genetics, Institute of Biology, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil.
Carmen J BuxóDental and Craniofacial Genomics Core, School of Dental Medicine, University of Puerto Rico, San Juan, PR, USA.
Jacqueline T HechtDepartment of Pediatrics, University of Texas Health Science Center At Houston, Houston, TX, USA.
George L WehbyDepartment of Health Management and Policy, College of Public Health, University of Iowa, Iowa City, IA, USA.
Ross E LongLancaster Cleft Palate Clinic, Lancaster, PA, USA.
Alexandre R VieiraDepartment of Oral and Craniofacial Sciences, School of Dental Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Seth M WeinbergDepartment of Oral and Craniofacial Sciences, School of Dental Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
John R ShafferDepartment of Oral and Craniofacial Sciences, School of Dental Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Lina M Moreno UribeDepartment of Family Dentistry, College of Dentistry, University of Iowa, Iowa City, IA, USA.
Mary L MarazitaDepartment of Oral and Craniofacial Sciences, School of Dental Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
University of Pittsburgh · USUniversity of Iowa · USClinic for Special Children · USConsejo Nacional de Investigaciones Científicas y Técnicas · ARThe University of Texas Health Science Center at Houston · USUniversidade Federal do Rio de Janeiro · BRUniversity of Colorado Health · USUniversity of Puerto Rico System · PRUniversity of the Philippines Manila · PH

Funding

Hispanics in Research Capability: SoHP & SOM Partnership (HIREC)S21MD001830 · NIMHD · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI ELIAS BONETA, AUGUSTO R, ESTAPE, ESTELA S · 2005 to 2010
$30.0M
TECHNOLOGIES AND RESOURCES FOR CORE LABORATORIESU54MD007587 · NIMHD · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI LUCIANO, CARLOS A., WOJNA, VALERIE · 2012 to 2018
$23.2M
Extending the Phenotype of Nonsyndromic Orofacial CleftsR01DE016148 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MARAZITA, MARY L., WEINBERG, SETH M · 2004 to 2018
$19.7M
Tracking and Evaluation CoreU54GM133807 · NIGMS · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI RIVAS-TUMANYAN, SONA · 2020 to 2024
$17.7M
MOLECULAR STUDIES IN NONSYNDROMIC CLEFT LIP AND PALATER01DE011931 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI BLANTON, SUSAN HALLORAN, HECHT, JACQUELINE T · 1999 to 2017
$7.6M
Molecular Genetic Epidemiology of Cleft Lip and PalateR37DE008559 · NIDCR · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 2004 to 2013
$6.8M
A ROLE FOR INNATE IMMUNITY IN SALIVARY IgA RESPONSESR01DE012242 · NIDCR · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI FUJIHASHI, KOHTARO · 2002 to 2010
$2.9M
Health outcomes and improved phenotypic characterization of cleft lip and palateR01DD000295 · DD · UNIVERSITY OF IOWA · PI WEHBY, GEORGE L · 2007 to 2009
$1.4M
Genetic and Environmental Risks for Oral Clefts in Puerto Rican HispanicsR00DE024571 · NIDCR · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI BUXO, CARMEN J. · 2018 to 2021
$1.2M
Human genomics analysis interface for FaceBase 2U01DE024425 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MARAZITA, MARY L. · 2014 to 2018
$1.2M
Genetic Architecture of Dental Caries of the Permanent DentitionR56DE027055 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SHAFFER, JOHN R · 2017 to 2017
$346k
Planning International Orofacial Cleft Genetic StudiesR21DE016930 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MARAZITA, MARY L · 2006 to 2007
$293k
NCBDD CDC HHS R01 DD000295NHLBI NIH HHS HHSN268201200008INIDCR NIH HHS R00 DE024571NIDCR NIH HHS R01 DE011931NIDCR NIH HHS R01 DE012242NIDCR NIH HHS R01 DE016148NIDCR NIH HHS R21 DE016930NIDCR NIH HHS R37 DE008559NIDCR NIH HHS R56 DE027055NIDCR NIH HHS U01 DE024425NIGMS NIH HHS U54 GM133807NIMHD NIH HHS S21 MD001830NIMHD NIH HHS U54 MD007587
6 · The paper itself

Abstract

backgroundDental caries is one of the most common chronic diseases and is influenced by a complex interplay of genetic and environmental factors. Most previous genetic studies of caries have focused on identifying genes that contribute to dental caries in specific ethnic groups, usually of European descent.

methodsThe aim of this study is to conduct a genome-wide association study (GWAS) to identify associations affecting susceptibility to caries in a large multiethnic population from Argentina, the Philippines, Guatemala, Hungary, and the USA, originally recruited for studies of orofacial clefts (POFC, N = 3686). Ages of the participants ranged from 2 to 12 years for analysis of the primary dentition, and 18-60 years for analysis of the permanent dentition. For each participant, dental caries was assessed by counts of decayed and filled teeth (dft/DFT) and genetic variants (single nucleotide polymorphisms, SNPs) were genotyped or imputed across the entire genome. Caries was analyzed separately for the primary and permanent dentitions, with age, gender, and presence/absence of any type of OFC treated as covariates. Efficient Mixed-Model Association eXpedited (EMMAX) was used to test genetic association, while simultaneously accounting for relatedness and stratification.

resultsWe identified several suggestive loci (5 × 10

conclusionThe results of this study warrant further investigation and may lead to a better understanding of cariogenesis in diverse populations, and help to improve dental caries prediction, prevention, and/or treatment in future.

Indexed as

Cleft LipCleft PalateDental CariesAdolescentAdultChildChild, PreschoolDMF IndexFemaleGenome-Wide Association StudyHomeodomain ProteinsHumansMaleMiddle AgedPhilippinesTranscription FactorsDLX4 protein, humanHomeodomain ProteinsTranscription FactorsDental cariesEthnicityGeneticsGenomics

Identifiers

PMID34311721
PMCPMC8311973
OpenAlexW3183746431

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.