Evidence map›Paper›PMID 34311129›Full record

ReviewBiomedical journal2022

The binding and specificity of chemokine binding proteins, through the lens of experiment and computation.

Lauren E Stark, Wenyan Guan, Michael E Colvin, Patricia J LiWang

Open access · goldAbstract readReview
In one paragraph

Review in Biomedical journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Lauren E StarkQuantitative and Systems Biology Graduate Group, University of California, USA.
Wenyan GuanMaterials and Biomaterials Science and Engineering, University of California, USA.
Michael E ColvinQuantitative and Systems Biology Graduate Group, University of California, USA; Department of Chemistry and Biochemistry, University of California, USA.
Patricia J LiWangQuantitative and Systems Biology Graduate Group, University of California, USA; Materials and Biomaterials Science and Engineering, University of California, USA; Department of Molecular and Cell Biology, University of California, USA. Electronic address: pliwang@ucmerced.edu.
University of California System · USQB3 · US

Funding

XRAY CRYSTALLOGRAPHIC STRUCTURE ANALYSIS: PROTEIN SORTINGP41RR001081 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GODDARD, THOMAS · 1985 to 2011
$17.6M
NCRR NIH HHS P41 RR001081
6 · The paper itself

Abstract

Chemokines are small proteins that are critical for immune function, being primarily responsible for the activation and chemotaxis of leukocytes. As such, many viruses, as well as parasitic arthropods, have evolved systems to counteract chemokine function in order to maintain virulence, such as binding chemokines, mimicking chemokines, or producing analogs of transmembrane chemokine receptors that strongly bind their targets. The focus of this review is the large group of chemokine binding proteins (CBP) with an emphasis on those produced by mammalian viruses. Because many chemokines mediate inflammation, these CBP could possibly be used pharmaceutically as anti-inflammatory agents. In this review, we summarize the structural properties of a diverse set of CBP and describe in detail the chemokine binding properties of the poxvirus-encoded CBP called vCCI (viral CC Chemokine Inhibitor). Finally, we describe the current and emerging capabilities of combining computational simulation, structural analysis, and biochemical/biophysical experimentation to understand, and possibly re-engineer, protein-protein interactions.

Indexed as

Carrier ProteinsPoxviridaeAnimalsChemokinesHumansMammalsProtein BindingViral ProteinsCarrier ProteinsChemokinesViral Proteins35KChemokineChemokine binding proteinChemokine inhibitorMolecular dynamicsviral CC Chemokine Inhibitor (vCCI)

Identifiers

PMID34311129
PMCPMC9421921
OpenAlexW3183151360

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.