Evidence map›Paper›PMID 34303933›Full record

ReviewCurrent opinion in structural biology2021

Phase separation in transcription factor dynamics and chromatin organization.

Kaustubh Wagh, David A Garcia, Arpita Upadhyaya

Open access · bronzeAbstract readReview
In one paragraph

Review in Current opinion in structural biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 96 citations in OpenAlex.

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  11. The Biological Function of Genome Organization.International journal of molecular sciences · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Kaustubh WaghDepartment of Physics, University of Maryland, College Park, MD, 20742, USA; Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA.
David A GarciaDepartment of Physics, University of Maryland, College Park, MD, 20742, USA; Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA.
Arpita UpadhyayaDepartment of Physics, University of Maryland, College Park, MD, 20742, USA; Institute for Physical Science and Technology, University of Maryland, College Park, MD, 20742, USA. Electronic address: arpitau@umd.edu.
National Institutes of Health · USUniversity of Maryland, College Park · US

Funding

Supplement request for Microtubule regulation of actomyosin dynamics and force generation in T lymphocytesR01GM131054 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI UPADHYAYA, ARPITA · 2019 to 2022
$1.4M
NIGMS NIH HHS R01 GM131054
6 · The paper itself

Abstract

Studies over the past decade have highlighted the key role of liquid-liquid phase separation in cellular organization and function. Dynamic compartmentalization of transcription factors and coactivators by such phase-separated condensates regulates the assembly of transcriptional machinery at genomic loci. Although rapid advances in microscopy have demonstrated the ubiquity of such condensates, a rigorous characterization of the physics of phase separation in transcription remains to be carried out. In this review, we discuss theoretical and experimental evidence for biomolecular condensates as dynamic regulators of transcription. Looking beyond, we highlight functional consequences for transcription factor dynamics and gene expression and discuss potential pitfalls of misclassifying biomolecular condensates as liquid droplets in the absence of a rigorous physical description.

Indexed as

Biomolecular CondensatesTranscription FactorsChromatinGene ExpressionGene Expression RegulationChromatinTranscription FactorsBiomolecular condensatesChromatin organizationGenome organizationPhase separationSuper-enhancerTranscription factors

Identifiers

PMID34303933
PMCPMC8794578
OpenAlexW3183690088

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.