Evidence map›Paper›PMID 34302633›Full record

ArticleGenes & genomics2021

Identification of novel candidate genes implicated in odontogenic potential in the developing mouse tooth germ using transcriptome analysis.

Yeo-Kyeong Shin, Seongmin Cheon, Sung-Duk Kim, Jung-Sun Moon, Jae-Young Kim, Sun-Hun Kim, Chungoo Park, Min-Seok Kim

Abstract read
PubMed Publisher
In one paragraph

Article in Genes & genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 58% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Prespecified dental mesenchymal cells for the making of a tooth.International journal of oral science · 2025
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Yeo-Kyeong Shin *Dental Science Research Institute, School of Dentistry, Chonnam National University, 300 Yongbong-Dong, Buk-Ku, Gwangju, 61186, South Korea.
Seongmin Cheon *School of Biological Sciences and Technology, Chonnam National University, 300 Yongbong-Dong, Buk-Ku, Gwangju, 61186, South Korea.
Sung-Duk KimDental Science Research Institute, School of Dentistry, Chonnam National University, 300 Yongbong-Dong, Buk-Ku, Gwangju, 61186, South Korea.
Jung-Sun MoonDental Science Research Institute, School of Dentistry, Chonnam National University, 300 Yongbong-Dong, Buk-Ku, Gwangju, 61186, South Korea.
Jae-Young KimDepartment of Biochemistry, School of Dentistry, IHBR, Kyungpook National University, Daegu, South Korea.
Sun-Hun KimDental Science Research Institute, School of Dentistry, Chonnam National University, 300 Yongbong-Dong, Buk-Ku, Gwangju, 61186, South Korea.
Chungoo ParkSchool of Biological Sciences and Technology, Chonnam National University, 300 Yongbong-Dong, Buk-Ku, Gwangju, 61186, South Korea. chungoo@jnu.ac.kr.
Min-Seok KimDental Science Research Institute, School of Dentistry, Chonnam National University, 300 Yongbong-Dong, Buk-Ku, Gwangju, 61186, South Korea. greatone@jnu.ac.kr.ORCID 0000-0001-5910-8268
Chonnam National University · KRKyungpook National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIn tooth bioengineering for replacement therapy of missing teeth, the utilized cells must possess an inductive signal-forming ability to initiate odontogenesis. This ability is called odontogenic potential. In mice, the odontogenic potential signal is known to be translocated from the epithelium to the mesenchyme at the early bud stage in the developing molar tooth germ. However, the identity of the molecular constituents of this process remains unclear.

objectiveThe purpose of this study is to determine the molecular identity of odontogenic potential and to provide a new perspective in the field of tooth development research.

methodsIn this study, whole transcriptome profiles of the mouse molar tooth germ epithelium and mesenchyme were investigated using the RNA sequencing (RNA-seq) technique. The analyzed transcriptomes corresponded to two developmental stages, embryonic day 11.5 (E11.5) and 14.5 (E14.5), which represent the odontogenic potential shifts.

resultsWe identified differentially expressed genes (DEGs), which were specifically overexpressed in both the E11.5 epithelium and E14.5 mesenchyme, but not expressed in their respective counterparts. Of the 55 DEGs identified, the top three most expressed transcription factor genes (transcription factor AP-2 beta isoform 3 [TFAP2B], developing brain homeobox protein 2 [DBX2], and insulin gene enhancer protein ISL-1 [ISL1]) and three tooth development-related genes (transcription factor HES-5 [HES5], platelet-derived growth factor D precursor [PDGFD], semaphrin-3 A precursor [SEMA3A]) were selected and validated by quantitative RT-PCR. Using immunofluorescence staining, the TFAP2B protein expression was found to be localized only at the E11.5 epithelium and E14.5 mesenchyme.

conclusionsThus, our empirical findings in the present study may provide a new perspective into the characterization of the molecules responsible for the odontogenic potential and may have an implication in the cell-based whole tooth regeneration strategy.

Indexed as

AnimalsBasic Helix-Loop-Helix ProteinsEpitheliumGene Expression Regulation, DevelopmentalGenetic Association StudiesHomeodomain ProteinsHumansLIM-Homeodomain ProteinsLymphokinesMesodermMiceMolarOdontogenesisPlatelet-Derived Growth FactorRepressor ProteinsRNA-SeqBasic Helix-Loop-Helix ProteinsDbx2 protein, mouseHes5 protein, mouseHomeodomain Proteinsinsulin gene enhancer binding protein Isl-1LIM-Homeodomain ProteinsLymphokinesPdgfd protein, mousePlatelet-Derived Growth FactorRepressor ProteinsSema3a protein, mouseSemaphorin-3ATfap2b protein, mouseTranscription Factor AP-2Transcription Factorsdeveloping molar toothOdontogenesisOdontogenic potentialRNA sequencing

Identifiers

PMID34302633
OpenAlexW3137315817

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.