Evidence map›Paper›PMID 34302339›Full record

ArticleIntegrative and comparative biology2022

A Unifying Framework for Understanding Biological Structures and Functions Across Levels of Biological Organization.

M A Herman, B R Aiello, J D DeLong, H Garcia-Ruiz, A L González, W Hwang, C McBeth, E A Stojković, M A Trakselis, N Yakoby

Abstract read
In one paragraph

Article in Integrative and comparative biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Nociplastic pain: controversy of the concept.The Korean journal of pain · 2025
    Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

M A HermanSchool of Biological Sciences, University of Nebraska-Lincoln, Lincoln, NE 68588-0118, USA.ORCID 0000-0001-6796-1568
B R AielloSchools of Physics and Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA.ORCID 0000-0001-9034-0460
J D DeLongSchool of Biological Sciences, University of Nebraska-Lincoln, Lincoln, NE 68588-0118, USA.ORCID 0000-0003-0558-8213
H Garcia-RuizDepartment of Plant Pathology, Nebraska Center for Virology, University of Nebraska-Lincoln, Lincoln, NE 68503, USA.ORCID 0000-0002-4681-470X
A L GonzálezDepartment of Biology and Center for Computational and Integrative Biology, Rutgers University, Camden, NJ 08103, USA.ORCID 0000-0002-4636-6329
W HwangDepartments of Biomedical Engineering, Materials Science and Engineering, and Physics and Astronomy, Texas A&M University, College Station, TX 77843, USA.ORCID 0000-0001-7514-3186
C McBethFraunhofer USA CMI and Boston University, Boston, MA 02215, USA.
E A StojkovićDepartment of Biology, Northeastern Illinois University, Chicago, IL 60641, USA.
M A TrakselisDepartment of Chemistry and Biochemistry, Baylor University, One Bear Place #97348, Waco, TX 76798, USA.ORCID 0000-0001-7054-8475
N YakobyDepartment of Biology and Center for Computational and Integrative Biology, Rutgers University, Camden, NJ 08103, USA.ORCID 0000-0002-7959-7588

Funding

Recognition and recruitment of RNA viruses into RNA silencing pathwaysR01GM120108 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI GARCIA-RUIZ, HERNAN · 2016 to 2020
$1.3M
6 · The paper itself

Abstract

The relationship between structure and function is a major constituent of the rules of life. Structures and functions occur across all levels of biological organization. Current efforts to integrate conceptual frameworks and approaches to address new and old questions promise to allow a more holistic and robust understanding of how different biological functions are achieved across levels of biological organization. Here, we provide unifying and generalizable definitions of both structure and function that can be applied across all levels of biological organization. However, we find differences in the nature of structures at the organismal level and below as compared to above the level of the organism. We term these intrinsic and emergent structures, respectively. Intrinsic structures are directly under selection, contributing to the overall performance (fitness) of the individual organism. Emergent structures involve interactions among aggregations of organisms and are not directly under selection. Given this distinction, we argue that while the functions of many intrinsic structures remain unknown, functions of emergent structures are the result of the aggregate of processes of individual organisms. We then provide a detailed and unified framework of the structure-function relationship for intrinsic structures to explore how their unknown functions can be defined. We provide examples of how these scalable definitions applied to intrinsic structures provide a framework to address questions on structure-function relationships that can be approached simultaneously from all subdisciplines of biology. We propose that this will produce a more holistic and robust understanding of how different biological functions are achieved across levels of biological organization.

Indexed as

Models, BiologicalAnimalsHumans

Identifiers

PMID34302339
PMCPMC8990247

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.