Evidence map›Paper›PMID 34301951›Full record

ArticleNature communications2021

Therapeutic manipulation of IKBKAP mis-splicing with a small molecule to cure familial dysautonomia.

Masahiko Ajiro, Tomonari Awaya, Young Jin Kim, Kei Iida, Masatsugu Denawa, Nobuo Tanaka, Ryo Kurosawa, Shingo Matsushima, Saiko Shibata, Tetsunori Sakamoto and 3 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.5field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 41 citations in OpenAlex.

  1. Depleting prion protein using splice-switching small molecules.bioRxiv : the preprint server for biology · 2026
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  15. Familial dysautonomia.Clinical autonomic research : official journal of the Clinical Autonomic Research Society · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Masahiko AjiroDepartment of Drug Discovery Medicine, Kyoto University Graduate School of Medicine, Kyoto, Japan.
Tomonari AwayaDepartment of Anatomy and Developmental Biology, Kyoto University Graduate School of Medicine, Kyoto, Japan.ORCID http://orcid.org/0000-0002-9004-3172
Young Jin KimCold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
Kei IidaMedical Research Support Center, Kyoto University Graduate School of Medicine, Kyoto, Japan.ORCID http://orcid.org/0000-0001-7130-8705
Masatsugu DenawaMedical Research Support Center, Kyoto University Graduate School of Medicine, Kyoto, Japan.ORCID http://orcid.org/0000-0001-5808-8197
Nobuo TanakaMedical Research Support Center, Kyoto University Graduate School of Medicine, Kyoto, Japan.
Ryo KurosawaDepartment of Anatomy and Developmental Biology, Kyoto University Graduate School of Medicine, Kyoto, Japan.ORCID http://orcid.org/0000-0002-6710-9989
Shingo MatsushimaDepartment of Drug Discovery Medicine, Kyoto University Graduate School of Medicine, Kyoto, Japan.
Saiko ShibataDepartment of Drug Discovery Medicine, Kyoto University Graduate School of Medicine, Kyoto, Japan.
Tetsunori SakamotoDepartment of Anatomy and Developmental Biology, Kyoto University Graduate School of Medicine, Kyoto, Japan.
Lorenz StuderCenter for Stem Cell Biology, Sloan Kettering Institute, New York, NY, USA.ORCID http://orcid.org/0000-0003-0741-7987
Adrian R KrainerCold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
Masatoshi HagiwaraDepartment of Drug Discovery Medicine, Kyoto University Graduate School of Medicine, Kyoto, Japan. hagiwara.masatoshi.8c@kyoto-u.ac.jp.ORCID http://orcid.org/0000-0002-7079-4788
Kyoto University · JPCold Spring Harbor Laboratory · USKettering University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Single-Cell Biology Shared ResourceP30CA045508 · NCI · COLD SPRING HARBOR LABORATORY · PI John Edward Moses · 1987 to 2026
$118.9M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM008444 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI FROHMAN, MICHAEL A. · 1992 to 2024
$12.6M
BIOCHEMISTRY OF PREMRNA SPLICINGR01GM042699 · NIGMS · COLD SPRING HARBOR LABORATORY · PI Adrian R Krainer · 1989 to 2026
$8.8M
Biochemistry of Pre-mRNA SplicingR37GM042699 · NIGMS · COLD SPRING HARBOR LABORATORY · PI KRAINER, ADRIAN R · 2012 to 2021
$7.7M
Antisense-oligonucleotide-directed inhibition of nonsense-mediated mRNA decay of CFTR geneF30HL137326 · NHLBI · STATE UNIVERSITY NEW YORK STONY BROOK · PI KIM, YOUNG JIN · 2018 to 2021
$171k
NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA045508NHLBI NIH HHS F30 HL137326NIGMS NIH HHS R01 GM042699NIGMS NIH HHS R37 GM042699NIGMS NIH HHS T32 GM008444
6 · The paper itself

Abstract

Approximately half of genetic disease-associated mutations cause aberrant splicing. However, a widely applicable therapeutic strategy to splicing diseases is yet to be developed. Here, we analyze the mechanism whereby IKBKAP-familial dysautonomia (FD) exon 20 inclusion is specifically promoted by a small molecule splice modulator, RECTAS, even though IKBKAP-FD exon 20 has a suboptimal 5' splice site due to the IVS20 + 6 T > C mutation. Knockdown experiments reveal that exon 20 inclusion is suppressed in the absence of serine/arginine-rich splicing factor 6 (SRSF6) binding to an intronic splicing enhancer in intron 20. We show that RECTAS directly interacts with CDC-like kinases (CLKs) and enhances SRSF6 phosphorylation. Consistently, exon 20 splicing is bidirectionally manipulated by targeting cellular CLK activity with RECTAS versus CLK inhibitors. The therapeutic potential of RECTAS is validated in multiple FD disease models. Our study indicates that small synthetic molecules affecting phosphorylation state of SRSFs is available as a new therapeutic modality for mechanism-oriented precision medicine of splicing diseases.

Indexed as

MutationAlternative SplicingAnimalsCells, CulturedDisease Models, AnimalDysautonomia, FamilialEnhancer Elements, GeneticExonsHeLa CellsHumansIntronsMice, TransgenicMolecular StructurePhosphoproteinsProtein BindingRNA Splice SitesElp1 protein, humanPhosphoproteinsRNA Splice SitesSerine-Arginine Splicing FactorsSmall Molecule LibrariesSRSF6 protein, humanTranscriptional Elongation Factors

Identifiers

PMID34301951
PMCPMC8302731
OpenAlexW3184199990

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.