Evidence map›Paper›PMID 34301599›Full record

ArticleScience advances2021

Fxr signaling and microbial metabolism of bile salts in the zebrafish intestine.

Jia Wen, Gilberto Padilla Mercado, Alyssa Volland, Heidi L Doden, Colin R Lickwar, Taylor Crooks, Genta Kakiyama, Cecelia Kelly, Jordan L Cocchiaro, Jason M Ridlon and 1 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
4.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 76 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Developmental regulation of intestinalbioRxiv : the preprint server for biology · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Probiotics EnhanceInternational journal of molecular sciences · 2024
    Article
  17. Article
  18. International journal of molecular sciences · 2024
    Article
  19. The role of animal hosts in shaping gut microbiome variation.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  20. Another renaissance for bile acid gastrointestinal microbiology.Nature reviews. Gastroenterology & hepatology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Jia WenDepartment of Molecular Genetics and Microbiology, Duke Microbiome Center, Duke University School of Medicine, Durham, NC, USA.ORCID 0000-0003-2352-2496
Gilberto Padilla MercadoDepartment of Molecular Genetics and Microbiology, Duke Microbiome Center, Duke University School of Medicine, Durham, NC, USA.ORCID 0000-0001-5423-1646
Alyssa VollandCarl R. Woese Institute for Genomic Biology, University of Illinois at Urbana Champaign, Urbana, IL, USA.ORCID 0000-0001-8977-5387
Heidi L DodenCarl R. Woese Institute for Genomic Biology, University of Illinois at Urbana Champaign, Urbana, IL, USA.ORCID 0000-0002-9282-5645
Colin R LickwarDepartment of Molecular Genetics and Microbiology, Duke Microbiome Center, Duke University School of Medicine, Durham, NC, USA.ORCID 0000-0002-7312-6291
Taylor CrooksCarl R. Woese Institute for Genomic Biology, University of Illinois at Urbana Champaign, Urbana, IL, USA.ORCID 0000-0001-7608-1992
Genta KakiyamaDepartment of Internal Medicine, School of Medicine, Virginia Commonwealth University, Richmond, VA, USA.ORCID 0000-0002-0366-6903
Cecelia KellyDepartment of Molecular Genetics and Microbiology, Duke Microbiome Center, Duke University School of Medicine, Durham, NC, USA.ORCID 0000-0001-6105-5492
Jordan L CocchiaroDepartment of Molecular Genetics and Microbiology, Duke Microbiome Center, Duke University School of Medicine, Durham, NC, USA.ORCID 0000-0001-6068-3948
Jason M RidlonCarl R. Woese Institute for Genomic Biology, University of Illinois at Urbana Champaign, Urbana, IL, USA. jmridlon@illinois.edu john.rawls@duke.edu.ORCID 0000-0001-5813-099X
John F RawlsDepartment of Molecular Genetics and Microbiology, Duke Microbiome Center, Duke University School of Medicine, Durham, NC, USA. jmridlon@illinois.edu john.rawls@duke.edu.ORCID 0000-0002-5976-5206
Duke University · USUniversity of Illinois Urbana-Champaign · USVirginia Commonwealth University · US

Funding

Role of IL-10 in APC Regulation of Protective vs. Pathogenic T Cell Responses toP01DK094779 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SHEIKH, SHEHZAD Z. · 2013 to 2023
$17.9M
Identifying genes required for digestive physiology and lipid metabolismR01DK093399 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI STEVEN A FARBER, John F Rawls · 2013 to 2026
$7.6M
Microbial Regulation of Host Nutrient MetabolismR01DK081426 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RAWLS, JOHN F · 2008 to 2019
$3.9M
Cellular and Environmental Regulation of Protein Absorption and Utilization in the Early IntestineR01DK121007 · NIDDK · DUKE UNIVERSITY · PI BAGNAT, MICHEL · 2019 to 2022
$2.0M
Genetic and Epigenetic Regulation of Intestinal InflammationR01DK113123 · NIDDK · DUKE UNIVERSITY · PI BAGNAT, MICHEL · 2018 to 2021
$1.7M
The role of HNF4a in maintaining intestinal epithelial cell homeostasis in the presence of microbesF31DK121392 · NIDDK · DUKE UNIVERSITY · PI KELLY, CECELIA · 2020 to 2022
$114k
Microbial Regulation of Macromolecule Absorption in the Zebrafish IntestineF32DK094592 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI COCCHIARO, JORDAN L · 2011 to 2012
$105k
NIDDK NIH HHS F31 DK121392NIDDK NIH HHS F32 DK094592NIDDK NIH HHS P01 DK094779NIDDK NIH HHS R01 DK081426NIDDK NIH HHS R01 DK093399NIDDK NIH HHS R01 DK113123NIDDK NIH HHS R01 DK121007
6 · The paper itself

Abstract

Bile salt synthesis, secretion into the intestinal lumen, and resorption in the ileum occur in all vertebrate classes. In mammals, bile salt composition is determined by host and microbial enzymes, affecting signaling through the bile salt-binding transcription factor farnesoid X receptor (Fxr). However, these processes in other vertebrate classes remain poorly understood. We show that key components of hepatic bile salt synthesis and ileal transport pathways are conserved and under control of Fxr in zebrafish. Zebrafish bile salts consist primarily of a C

Indexed as

Bile Acids and SaltsZebrafishAnimalsIntestinesLiverMammalsReceptors, Cytoplasmic and NuclearTranscription FactorsBile Acids and SaltsReceptors, Cytoplasmic and NuclearTranscription Factors

Identifiers

PMID34301599
PMCPMC8302129
OpenAlexW3183457600

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.