Evidence map›Paper›PMID 34301298›Full record

ArticleGut pathogens2021

One health pathogen surveillance demonstrated the dissemination of gut pathogens within the two coastal regions associated with intensive farming.

Qingyao Wang, Yixiang Zhang, Qian Yang, Songzhe Fu, Baocheng Qu, Tom Defoirdt

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Gut pathogens, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it, 13 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Qingyao Wang *College of Marine Science and Environment, Dalian Ocean University, No. 52 Heishijiao Street, Dalian, 116023, China.
Yixiang Zhang *CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institutes for Biological Sciences (SIBS), Chinese Academy of Sciences, Shanghai, China.
Qian YangCenter for Microbial Ecology and Technology (CMET), Ghent University, Coupure Links 653, Gent, 9000, Belgium.
Songzhe FuCollege of Marine Science and Environment, Dalian Ocean University, No. 52 Heishijiao Street, Dalian, 116023, China. fusongzhe@dlou.edu.cn.ORCID 0000-0003-1754-199X
Baocheng QuCollege of Marine Science and Environment, Dalian Ocean University, No. 52 Heishijiao Street, Dalian, 116023, China.
Tom DefoirdtCenter for Microbial Ecology and Technology (CMET), Ghent University, Coupure Links 653, Gent, 9000, Belgium.
Dalian Ocean University · CNGhent University · BEChinese Academy of Sciences · CN

Funding

Young Scientists Fund 81903372
6 · The paper itself

Abstract

backgroundIntensive aquaculture farming has caused significant degradation of coastal wetlands and has been proposed as a reservoir for pathogenic Vibrio spp.

resultsGut pathogens including Vibrio spp., Salmonella spp., and Klebsiella spp. were isolated from bird feces, shrimp and wetland water in two typical coastal regions of China in 2015 and 2017 and were subsequently subjected to whole-genome sequencing. Meanwhile, local patient isolates were also selected to confirm the epidemiological links. Bacterial community composition analyses of the sediments that were sampled in 2015 and 2017 were conducted by the hypervariable region 4 of the 16S rRNA gene. Together with the local clinical isolates, we observed highly related Vibrio isolates from waterbirds, wetlands and shrimp. Phylogenetic genome comparisons also demonstrated that sequence types ST3 and ST2414 Vibrio parahaemolyticus isolates obtained from aquatic animals were clonally related to patient isolates. Likewise, three Salmonella typhimurium isolates were also genomically related to one clinical strain. The results showed that farming activities significantly altered the community composition and resulted in the emergence of several pathogens, including Acinetobacter, Mycobacterium and Legionella.

conclusionsIn conclusion, our results demonstrated that intensive shrimp farming in wetlands has two devastating impacts: pathogen dissemination from aquatic animals into migratory birds and transmission of foodborne pathogens into local communities.

Indexed as

One healthShrimp farmingVibrio parahaemolyticusVibrio vulnificusWetlands

Identifiers

PMID34301298
PMCPMC8298693
OpenAlexW3186225490

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.