Evidence map›Paper›PMID 34301182›Full record

ArticleBMC plant biology2021

The role of strigolactones in P deficiency induced transcriptional changes in tomato roots.

Yanting Wang, Hernando G Suárez Duran, Jan C van Haarst, Elio G W M Schijlen, Carolien Ruyter-Spira, Marnix H Medema, Lemeng Dong, Harro J Bouwmeester

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC plant biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
5.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
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  5. Microbial drivers of root plasticity.The New phytologist · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Yanting WangPlant Hormone Biology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands.
Hernando G Suárez DuranBioinformatics Group, Wageningen University and Research, Wageningen, The Netherlands.
Jan C van HaarstBusiness Unit Bioscience, Plant Research International, Wageningen, The Netherlands.
Elio G W M SchijlenBusiness Unit Bioscience, Plant Research International, Wageningen, The Netherlands.
Carolien Ruyter-SpiraLaboratory of Plant Physiology, Wageningen University and Research, Wageningen, The Netherlands.
Marnix H MedemaBioinformatics Group, Wageningen University and Research, Wageningen, The Netherlands.
Lemeng DongPlant Hormone Biology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands.
Harro J BouwmeesterPlant Hormone Biology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands. H.J.Bouwmeester@uva.nl.
University of Amsterdam · NLWageningen University & Research · NLCentre for BioSystems Genomics · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPhosphorus (P) is an essential macronutrient for plant growth and development. Upon P shortage, plant responds with massive reprogramming of transcription, the Phosphate Starvation Response (PSR). In parallel, the production of strigolactones (SLs)-a class of plant hormones that regulates plant development and rhizosphere signaling molecules-increases. It is unclear, however, what the functional link is between these two processes. In this study, using tomato as a model, RNAseq was used to evaluate the time-resolved changes in gene expression in the roots upon P starvation and, using a tomato CAROTENOID CLEAVAGE DIOXYGENASES 8 (CCD8) RNAi line, what the role of SLs is in this.

resultsGene ontology (GO)-term enrichment and KEGG analysis of the genes regulated by P starvation and P replenishment revealed that metabolism is an important component of the P starvation response that is aimed at P homeostasis, with large changes occurring in glyco-and galactolipid and carbohydrate metabolism, biosynthesis of secondary metabolites, including terpenoids and polyketides, glycan biosynthesis and metabolism, and amino acid metabolism. In the CCD8 RNAi line about 96% of the PSR genes was less affected than in wild-type (WT) tomato. For example, phospholipid biosynthesis was suppressed by P starvation, while the degradation of phospholipids and biosynthesis of substitute lipids such as sulfolipids and galactolipids were induced by P starvation. Around two thirds of the corresponding transcriptional changes depend on the presence of SLs. Other biosynthesis pathways are also reprogrammed under P starvation, such as phenylpropanoid and carotenoid biosynthesis, pantothenate and CoA, lysine and alkaloids, and this also partially depends on SLs. Additionally, some plant hormone biosynthetic pathways were affected by P starvation and also here, SLs are required for many of the changes (more than two thirds for Gibberellins and around one third for Abscisic acid) in the gene expression.

conclusionsOur analysis shows that SLs are not just the end product of the PSR in plants (the signals secreted by plants into the rhizosphere), but also play a major role in the regulation of the PSR (as plant hormone).

Indexed as

Crops, AgriculturalGene Expression Regulation, PlantGenetic VariationGenotypeHeterocyclic Compounds, 3-RingLactonesPhosphorusPlant RootsSolanum lycopersicumTranscription FactorsHeterocyclic Compounds, 3-RingLactonesPhosphorusTranscription FactorsP starvationRNAseqRootStrigolactoneTomatoTranscriptional changes

Identifiers

PMID34301182
PMCPMC8299696
OpenAlexW3183295545

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.