Evidence map›Paper›PMID 34299187›Full record

ArticleInternational journal of molecular sciences2021

A Regulator Based "Semi-Targeted" Approach to Activate Silent Biosynthetic Gene Clusters.

Erik Mingyar, Lucas Mühling, Andreas Kulik, Anika Winkler, Daniel Wibberg, Jörn Kalinowski, Kai Blin, Tilmann Weber, Wolfgang Wohlleben, Evi Stegmann

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. DAP-seq Reveals Cluster-Situated Regulator Control of NumerousbioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Identification of Small RNAs inInternational journal of molecular sciences · 2024
    Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Bacterial Regulatory Proteins.International journal of molecular sciences · 2022
    Article
  13. Review
  14. Activation and Identification of a Griseusin Cluster inMolecules (Basel, Switzerland) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Erik MingyarDepartment of Microbiology and Biotechnology, Interfaculty Institute of Microbiology and Infection Medicine, University of Tübingen Auf der Morgenstelle 28, 72076 Tübingen, Germany.ORCID 0000-0002-0373-3731
Lucas MühlingDepartment of Microbiology and Biotechnology, Interfaculty Institute of Microbiology and Infection Medicine, University of Tübingen Auf der Morgenstelle 28, 72076 Tübingen, Germany.
Andreas KulikDepartment of Microbiology and Biotechnology, Interfaculty Institute of Microbiology and Infection Medicine, University of Tübingen Auf der Morgenstelle 28, 72076 Tübingen, Germany.ORCID 0000-0002-6914-7313
Anika WinklerCenter for Biotechnology (CeBiTec), Universität Bielefeld, 33615 Bielefeld, Germany.
Daniel WibbergCenter for Biotechnology (CeBiTec), Universität Bielefeld, 33615 Bielefeld, Germany.
Jörn KalinowskiCenter for Biotechnology (CeBiTec), Universität Bielefeld, 33615 Bielefeld, Germany.ORCID 0000-0002-9052-1998
Kai BlinNovo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet, Building 220, 2800 Kgs. Lyngby, Denmark.ORCID 0000-0003-3764-6051
Tilmann WeberNovo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet, Building 220, 2800 Kgs. Lyngby, Denmark.ORCID 0000-0002-8260-5120
Wolfgang WohllebenDepartment of Microbiology and Biotechnology, Interfaculty Institute of Microbiology and Infection Medicine, University of Tübingen Auf der Morgenstelle 28, 72076 Tübingen, Germany.
Evi StegmannDepartment of Microbiology and Biotechnology, Interfaculty Institute of Microbiology and Infection Medicine, University of Tübingen Auf der Morgenstelle 28, 72076 Tübingen, Germany.ORCID 0000-0002-1017-5459
Bielefeld University · DEGerman Center for Infection Research · DENovo Nordisk Foundation · DKUniversity of Tübingen · DE

Funding

Deutsches Zentrum für Infektionsforschung 9.818
6 · The paper itself

Abstract

By culturing microorganisms under standard laboratory conditions, most biosynthetic gene clusters (BGCs) are not expressed, and thus, the products are not produced. To explore this biosynthetic potential, we developed a novel "semi-targeted" approach focusing on activating "silent" BGCs by concurrently introducing a group of regulator genes into streptomycetes of the Tübingen strain collection. We constructed integrative plasmids containing two classes of regulatory genes under the control of the constitutive promoter

Indexed as

Multigene FamilyBacterial ProteinsBenz(a)AnthracenesBenzopyransGene Expression Regulation, BacterialGlycosidesPromoter Regions, GeneticRecombinant ProteinsStreptomycesTranscription FactorsTrisaccharidesBacterial ProteinsBenz(a)AnthracenesBenzopyranschartreusinGlycosidesmayamycinRecombinant ProteinsTranscription FactorsTrisaccharideswarkmycinregulationsecondary metabolitessilent biosynthetic gene clusterstreptomyces

Identifiers

PMID34299187
PMCPMC8306873
OpenAlexW3178925962

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.