Evidence map›Paper›PMID 34298994›Full record

ArticleInternational journal of molecular sciences2021

Folding and Intrinsic Disorder of the Receptor Tyrosine Kinase KIT Insert Domain Seen by Conventional Molecular Dynamics Simulations.

Julie Ledoux, Alain Trouvé, Luba Tchertanov

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Julie LedouxCentre Borelli, CNRS, ENS Paris-Saclay, Université Paris-Saclay, 4 Avenue des Sciences, F-91190 Gif-sur-Yvette, France.
Alain TrouvéCentre Borelli, CNRS, ENS Paris-Saclay, Université Paris-Saclay, 4 Avenue des Sciences, F-91190 Gif-sur-Yvette, France.ORCID 0000-0002-8298-5995
Luba TchertanovCentre Borelli, CNRS, ENS Paris-Saclay, Université Paris-Saclay, 4 Avenue des Sciences, F-91190 Gif-sur-Yvette, France.
Centre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The kinase insert domain (KID) of RTK KIT is the key recruitment region for downstream signalling proteins. KID, studied by molecular dynamics simulations as a cleaved polypeptide and as a native domain fused to KIT, showed intrinsic disorder represented by a set of heterogeneous conformations. The accurate atomistic models showed that the helical fold of KID is mainly sequence dependent. However, the reduced fold of the native KID suggests that its folding is allosterically controlled by the kinase domain. The tertiary structure of KID represents a compact array of highly variable α- and 3

Indexed as

Molecular Dynamics SimulationAllosteric RegulationAmino Acid SequenceCatalytic DomainEntropyHydrophobic and Hydrophilic InteractionsModels, MolecularProtein ConformationProtein Conformation, alpha-HelicalProtein DomainsProtein FoldingReceptor Protein-Tyrosine KinasesTyrosineReceptor Protein-Tyrosine KinasesTyrosineconformational plasticityfree energy landscapeintrinsically disordered regionKIDkinase insert domainKIT cytoplasmic regionmolecular dynamics and foldingreceptor tyrosine kinaseRTKtransient structures

Identifiers

PMID34298994
PMCPMC8307779
OpenAlexW3180247682

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.