Evidence map›Paper›PMID 34297843›Full record

ArticleThe Journal of antimicrobial chemotherapy2021

Prevalence of gp160 polymorphisms known to be related to decreased susceptibility to temsavir in different subtypes of HIV-1 in the Los Alamos National Laboratory HIV Sequence Database.

Margaret Gartland, Eric Arnoult, Brian T Foley, Max Lataillade, Peter Ackerman, Cyril Llamoso, Mark Krystal

Open access · hybridAbstract read
In one paragraph

Article in The Journal of antimicrobial chemotherapy, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 12 citations in OpenAlex.

  1. Trial
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  11. Fostemsavir resistance in clinical context: a narrative review.Therapeutic advances in infectious disease
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Margaret GartlandViiV Healthcare, Five Moore Drive, Research Triangle Park, NC 27709, USA.
Eric ArnoultGlaxoSmithKline, 1250 South Collegeville Road, Collegeville, PA 19426, USA.
Brian T FoleyLos Alamos National Laboratory, T-6 Theoretical Biology and Biophysics, Mail Stop K710, Los Alamos, NM 87544, USA.
Max LatailladeViiV Healthcare, 36 East Industrial Road, Branford, CT 06405, USA.
Peter AckermanViiV Healthcare, 36 East Industrial Road, Branford, CT 06405, USA.
Cyril LlamosoViiV Healthcare, 36 East Industrial Road, Branford, CT 06405, USA.
Mark KrystalViiV Healthcare, 36 East Industrial Road, Branford, CT 06405, USA.
GlaxoSmithKline (United States) · USLos Alamos National Laboratory · USTriangle · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFostemsavir, a prodrug of the gp120-directed attachment inhibitor temsavir, is indicated for use in heavily treatment-experienced individuals with MDR HIV-1. Reduced susceptibility to temsavir in the clinic maps to discrete changes at amino acid positions in gp160: S375, M426, M434 and M475.

objectivesTo query the Los Alamos National Laboratory (LANL) HIV Sequence Database for the prevalence of polymorphisms at gp160 positions of interest.

methodsFull-length gp160 sequences (N = 7560) were queried for amino acid polymorphisms relative to the subtype B consensus at positions of interest; frequencies were reported for all sequences and among subtypes/circulating recombinant forms (CRFs) with ≥10 isolates in the database.

resultsAmong 239 subtypes in the database, the 5 most prevalent were B (n = 2651, 35.1%), C (n = 1626, 21.5%), CRF01_AE (n = 674, 8.9%), A1 (n = 273, 3.6%) and CRF02_AG (n = 199, 2.6%). Among all 7560 sequences, the most prevalent amino acids at positions of interest (S375, 73.5%; M426, 82.1%; M434, 88.2%; M475, 89.9%) were the same as the subtype B consensus. Specific polymorphisms with the potential to decrease temsavir susceptibility (S375H/I/M/N/T/Y, M426L/P, M434I/K and M475I) were found in <10% of isolates of subtypes D, G, A6, BC, F1, CRF07_BC, CRF08_BC, 02A, CRF06_cpx, F2, 02G and 02B. S375H and M475I were predominant among CRF01_AE (S375H, 99.3%; M475I, 76.3%; consistent with previously reported low temsavir susceptibility of this CRF) and 01B (S375H, 71.7%; M475I, 49.5%).

conclusionsAnalysis of the LANL HIV Sequence Database found a low prevalence of gp160 amino acid polymorphisms with the potential to reduce temsavir susceptibility overall and among most of the common subtypes.

Indexed as

Anti-HIV AgentsHIV-1Drug Resistance, ViralHIV Envelope Protein gp160HIV InfectionsHumansPrevalenceAnti-HIV Agentsgp160 protein, Human immunodeficiency virus 1HIV Envelope Protein gp160

Identifiers

PMID34297843
PMCPMC8561262
OpenAlexW3184902330

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.