Evidence map›Paper›PMID 34297779›Full record

ArticlePloS one2021

Novel genomic islands and a new vanD-subtype in the first sporadic VanD-type vancomycin resistant enterococci in Norway.

Mushtaq T S Al Rubaye, Jessin Janice, Jørgen Vildershøj Bjørnholt, Aleksandra Jakovljev, Maria Elisabeth Hultström, Arnfinn Sundsfjord, Kristin Hegstad

Open access · goldAbstract readCase Reports
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.5field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Microbial genomics · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Characterization of vancomycin-resistanceJAC-antimicrobial resistance · 2023
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Mushtaq T S Al RubayeResearch Group for Host-Microbe Interactions, Department of Medical Biology, University of Tromsø (UiT) - The Arctic University of Norway, Tromsø, Norway.
Jessin JaniceResearch Group for Host-Microbe Interactions, Department of Medical Biology, University of Tromsø (UiT) - The Arctic University of Norway, Tromsø, Norway.ORCID 0000-0001-9991-6315
Jørgen Vildershøj BjørnholtDepartment of Clinical Microbiology, Oslo University Hospital, Oslo, Norway.
Aleksandra JakovljevDepartment of Medical Microbiology, St Olavs Hospital, Trondheim, Norway.
Maria Elisabeth HultströmDivision of Nephrology, Department of Medicine, St Olavs Hospital, Trondheim, Norway.
Arnfinn SundsfjordResearch Group for Host-Microbe Interactions, Department of Medical Biology, University of Tromsø (UiT) - The Arctic University of Norway, Tromsø, Norway.
Kristin HegstadResearch Group for Host-Microbe Interactions, Department of Medical Biology, University of Tromsø (UiT) - The Arctic University of Norway, Tromsø, Norway.ORCID 0000-0002-1314-0497
University Hospital of North Norway · NOSt Olav's University Hospital · NOOslo University Hospital · NOUiT The Arctic University of Norway · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundVancomycin-resistant enterococci (VRE) represent several types of transferable vancomycin resistance gene clusters. The vanD type, associated with moderate to high level vancomycin resistance, has only sporadically been described in clinical isolates. The aim of this study was to perform a genetic characterization of the first VanD-type VRE strains detected in Norway.

methodsThe VanD-type VRE-strains (n = 6) from two patient cases were examined by antimicrobial susceptibility testing and whole genome sequencing (WGS) to uncover Van-phenotype, strain phylogeny, the vanD gene clusters, and their genetic surroundings. The putative transferability of vanD was examined by circularization PCR and filter mating.

resultsThe VanD-type Enterococcus faecium (n = 4) and Enterococcus casseliflavus (n = 2) strains recovered from two cases (A and B), expressed moderate to high level vancomycin resistance (MIC 64->256 mg/L) and various levels of teicoplanin susceptibility (MIC 2->256 mg/L). WGS analyses revealed phylogenetically different E. faecium strains (A1, A2, and A3 of case A and B1 from case B) as well as vanD gene clusters located on different novel genomic islands (GIs). The E. casseliflavus strains (B2 and B3 of case B) were not clonally related, but harbored nearly identical novel GIs. The vanD cluster of case B strains represents a novel vanD-subtype. All the vanD-GIs were integrated at the same chromosomal site and contained genes consistent with a Clostridiales origin. Circular forms of the vanD-GIs were detected in all strains except B1. Transfer of vanD to an E. faecium recipient was unsuccessful.

conclusionsWe describe the first VanD-type E. casseliflavus strains, a novel vanD-subtype, and three novel vanD-GIs with a genetic content consistent with a Clostridiales order origin. Despite temporal occurrence, case A and B E. faecium strains were phylogenetically diverse and harbored different vanD subtypes and vanD-GIs.

Indexed as

Genomic IslandsVancomycin ResistanceAgedAnti-Bacterial AgentsBacterial ProteinsEnterococcusEnterococcus faeciumFemaleGram-Positive Bacterial InfectionsHumansMiddle AgedPeptide SynthasesVancomycinAnti-Bacterial AgentsBacterial ProteinsPeptide SynthasesVancomycinVanD protein, Enterococcus faecium

Identifiers

PMID34297779
PMCPMC8301612
OpenAlexW3183216473

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.