Evidence map›Paper›PMID 34297039›Full record

ArticleThe Journal of experimental medicine2021

ADAR and hnRNPC deficiency synergize in activating endogenous dsRNA-induced type I IFN responses.

Anna-Maria Herzner, Zia Khan, Eric L Van Nostrand, Sara Chan, Trinna Cuellar, Ronald Chen, Ximo Pechuan-Jorge, Laszlo Komuves, Margaret Solon, Zora Modrusan and 4 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 28 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. HnRNP C binding to invertedScience advances · 2026
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Zfp697 is an RNA-binding protein that regulates skeletal muscle inflammation and remodeling.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  14. Review
  15. International journal of molecular sciences · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Anna-Maria HerznerDepartment of Cancer Immunology, Genentech, South San Francisco, CA.ORCID 0000-0001-6746-0587
Zia KhanDepartment of Human Genetics, Genentech, South San Francisco, CA.ORCID 0000-0002-7859-3489
Eric L Van NostrandDepartment of Cellular and Molecular Medicine, Stem Cell Program and the Institute for Genomic Medicine, University of California, San Diego, La Jolla, CA.ORCID 0000-0002-5188-0082
Sara ChanDepartment of Pathology, Genentech, South San Francisco, CA.ORCID 0000-0001-6154-4106
Trinna CuellarDepartment of Molecular Biology, Genentech, South San Francisco, CA.ORCID 0000-0002-9991-9505
Ronald ChenDepartment of Human Genetics, Genentech, South San Francisco, CA.ORCID 0000-0002-6333-9859
Ximo Pechuan-JorgeDepartment of Cancer Immunology, Genentech, South San Francisco, CA.ORCID 0000-0001-8938-7931
Laszlo KomuvesDepartment of Pathology, Genentech, South San Francisco, CA.ORCID 0000-0003-3057-4382
Margaret SolonDepartment of Pathology, Genentech, South San Francisco, CA.ORCID 0000-0002-3998-0881
Zora ModrusanDepartment of Microchemistry, Proteomics & Lipidomics and Next Generation Sequencing, Genentech, South San Francisco, CA.
Benjamin HaleyDepartment of Molecular Biology, Genentech, South San Francisco, CA.ORCID 0000-0002-0074-0020
Gene W YeoDepartment of Cellular and Molecular Medicine, Stem Cell Program and the Institute for Genomic Medicine, University of California, San Diego, La Jolla, CA.ORCID 0000-0002-0799-6037
Timothy W BehrensDepartment of Human Genetics, Genentech, South San Francisco, CA.ORCID 0000-0002-0339-5250
Matthew L AlbertDepartment of Cancer Immunology, Genentech, South San Francisco, CA.ORCID 0000-0001-7285-6973
Center for Human Genetics · USUniversity of California San Diego · US

Funding

Comprhensive analysis of functional RNA elements encoded in the human genomeU54HG007005 · NHGRI · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI GRAVELEY, BRENTON R. · 2012 to 2017
$12.5M
A Comprehensive Functional Map of Human Protein-RNA InteractionsU41HG009889 · NHGRI · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI GRAVELEY, BRENTON R. · 2018 to 2021
$9.4M
Robust, high-throughput identification of RNA processing regulators and regulatory networks genome-wideR00HG009530 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI VAN NOSTRAND, ERIC LYMAN · 2020 to 2022
$747k
Robust, high-throughput identification of RNA processing regulators and regulatory networks genome-wideK99HG009530 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI VAN NOSTRAND, ERIC LYMAN · 2017 to 2018
$250k
NHGRI NIH HHS HG009530NHGRI NIH HHS K99 HG009530NHGRI NIH HHS R00 HG009530NHGRI NIH HHS U41 HG009889NHGRI NIH HHS U54 HG007005NHGRI NIH HHS U54HG007005
6 · The paper itself

Abstract

Cytosolic double-stranded RNA (dsRNA) initiates type I IFN responses. Endogenous retroelements, notably Alu elements, constitute a source of dsRNA. Adenosine-to-inosine (A-to-I) editing by ADAR induces mismatches in dsRNA and prevents recognition by MDA5 and autoinflammation. To identify additional endogenous dsRNA checkpoints, we conducted a candidate screen in THP-1 monocytes and found that hnRNPC and ADAR deficiency resulted in synergistic induction of MDA5-dependent IFN responses. RNA-seq analysis demonstrated dysregulation of Alu-containing introns in hnRNPC-deficient cells via utilization of unmasked cryptic splice sites, including introns containing ADAR-dependent A-to-I editing clusters. These putative MDA5 ligands showed reduced editing in the absence of ADAR, providing a plausible mechanism for the combined effects of hnRNPC and ADAR. This study contributes to our understanding of the control of repetitive element-induced autoinflammation and suggests that patients with hnRNPC-mutated tumors might maximally benefit from ADAR inhibition-based immunotherapy.

Indexed as

Adenosine DeaminaseAlu ElementsCRISPR-Cas SystemsCytosolHeterogeneous-Nuclear Ribonucleoprotein Group CHumansInterferon-Induced Helicase, IFIH1Interferon Type IIntronsMCF-7 CellsMembrane ProteinsRNA-Binding ProteinsRNA, Double-StrandedRNA EditingTHP-1 CellsADAR protein, humanAdenosine DeaminaseHeterogeneous-Nuclear Ribonucleoprotein Group CHNRNPC protein, humanIFI27 protein, humanIFIH1 protein, humanInterferon-Induced Helicase, IFIH1Interferon Type IMembrane ProteinsRNA-Binding ProteinsRNA, Double-Stranded

Identifiers

PMID34297039
PMCPMC8313407
OpenAlexW3186004393

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.