Evidence map›Paper›PMID 34295604›Full record

Article3 Biotech2021

Development of a SYBR Green-based RT-qPCR assay for the detection of Indian citrus ringspot virus.

Amol D Kokane, Kapil Lawrence, Sunil B Kokane, Mrugendra G Gubyad, Pragati Misra, M Krishna Reddy, Dilip Kumar Ghosh

Open access · greenAbstract read
In one paragraph

Article in 3 Biotech, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Amol D KokaneIndian Council of Agricultural Research, Central Citrus Research Institute, Amravati Road, Nagpur, Maharashtra 440033 India.
Kapil LawrenceDepartment of Molecular and Cellular Engineering, Sam Higginbottom University of Agriculture, Technology and Sciences, Allahabad, Uttar Pradesh 211007 India.
Sunil B KokaneIndian Council of Agricultural Research, Central Citrus Research Institute, Amravati Road, Nagpur, Maharashtra 440033 India.
Mrugendra G GubyadIndian Council of Agricultural Research, Central Citrus Research Institute, Amravati Road, Nagpur, Maharashtra 440033 India.
Pragati MisraDepartment of Molecular and Cellular Engineering, Sam Higginbottom University of Agriculture, Technology and Sciences, Allahabad, Uttar Pradesh 211007 India.
M Krishna ReddyICAR, Indian Institute of Horticultural Research, Bangalore, Karnataka 560089 India.
Dilip Kumar GhoshIndian Council of Agricultural Research, Central Citrus Research Institute, Amravati Road, Nagpur, Maharashtra 440033 India.ORCID 0000-0001-6237-7610
Indian Council of Agricultural Research · INSam Higginbottom Institute of Agriculture · INIndian Institute of Horticultural Research · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Indian citrus ringspot virus (ICRSV) that causes ringspot disease, especially to 'Kinnow mandarin' hampers the sustainability of crop production. Presently, the disease is not amenable for control through host resistance or the introduction of chemicals, hence raising virus-free plants is one of the most effective approaches to manage the disease. Consequently, it is necessary to develop rapid, sensitive, specific, and early diagnostic methods for disease control. In the present study, newly designed primers targeting a 164 bp region of the ICRSV coat protein gene were used to develop and optimize a SYBR Green-based quantitative reverse transcription polymerase chain reaction (RT-qPCR) assay, for the detection of ICRSV. The RT-qPCR assay was evaluated and confirmed using viral RNA extracted from ICRSV infected plants maintained in screen house as well as field samples. The standard curves displayed a dynamic linear range across eight log units of ICRSV-cRNA copy number ranging from 9.48.1 fmol (5.709 × 10

Indexed as

CitruscRNADetectionICRSVRT-qPCRSYBR green

Identifiers

PMID34295604
PMCPMC8245607
OpenAlexW3174337693

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.