ArticleRoyal Society open science2021
June: open-source individual-based epidemiology simulation.
Article in Royal Society open science, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.
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Who cites it
16 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Epidemiological modelling in refugee and internally displaced people settlements: challenges and ways forward.BMJ global health · 2022Pooled it
- On real-time calibrated prediction for complex model-based decision support in pandemics: Part 2.PLoS computational biology · 2026Article
- Start from the end: Policy exploration to inform effective and consistent interventions applied to COVID-19 in St. Louis.PNAS nexus · 2026Article
- Risk mapping novel respiratory pathogens with large-scale dynamic contact networks.Communications medicine · 2026Article
- REPLAY: a GPU-accelerated tool for temporal contact network epidemiology.BMC medical informatics and decision making · 2025Article
- Review
- Identifying the effectiveness of face mask in a large population with a network-based fluid model.PloS one · 2025Article
- Foresight approaches for future health shocks: integration into policy making and accompanying research priorities.BMJ (Clinical research ed.) · 2024Article
- A mixed-method approach to determining contact matrices in the Cox's Bazar refugee settlement.Royal Society open science · 2023Article
- Evaluation of COVID-19 intervention policies in South Korea using the stochastic individual-based model.Scientific reports · 2023Article
- Article
- Bayesian emulation and history matching of JUNE.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2022Article
- Estimating SARS-CoV-2 variant fitness and the impact of interventions in England using statistical and geo-spatial agent-based models.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2022Article
- Operational response simulation tool for epidemics within refugee and IDP settlements: A scenario-based case study of the Cox's Bazar settlement.PLoS computational biology · 2021Article
- Association of Simulated COVID-19 Vaccination and Nonpharmaceutical Interventions With Infections, Hospitalizations, and Mortality.JAMA network open · 2021Article
- Estimating the impact of interventions against COVID-19: From lockdown to vaccination.PloS one · 2021Article
Corrections and comments
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Authors and funding
14 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We introduce June, an open-source framework for the detailed simulation of epidemics on the basis of social interactions in a virtual population constructed from geographically granular census data, reflecting age, sex, ethnicity and socio-economic indicators. Interactions between individuals are modelled in groups of various sizes and properties, such as households, schools and workplaces, and other social activities using social mixing matrices. June provides a suite of flexible parametrizations that describe infectious diseases, how they are transmitted and affect contaminated individuals. In this paper, we apply June to the specific case of modelling the spread of COVID-19 in England. We discuss the quality of initial model outputs which reproduce reported hospital admission and mortality statistics at national and regional levels as well as by age strata.
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