Evidence map›Paper›PMID 34294725›Full record

ArticleNature communications2021

Structural and mechanistic basis for translation inhibition by macrolide and ketolide antibiotics.

Bertrand Beckert, Elodie C Leroy, Shanmugapriya Sothiselvam, Lars V Bock, Maxim S Svetlov, Michael Graf, Stefan Arenz, Maha Abdelshahid, Britta Seip, Helmut Grubmüller and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 94 citations in OpenAlex.

  1. Approaches for Studying Context Specificity of Translation Inhibitor Action.International journal of molecular sciences · 2026
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  19. Paenilamicins from the honey bee pathogenbioRxiv : the preprint server for biology · 2024
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 3 countries.

Bertrand Beckert *Institute for Biochemistry and Molecular Biology, University of Hamburg, Hamburg, Germany.
Elodie C Leroy *Univ. Bordeaux, Centre National de la Recherche Scientifique, Institut National de la Santé et de la Recherche Médicale, ARNA, UMR 5320, U1212, Institut Européen de Chimie et Biologie, Pessac, France.ORCID 0000-0001-7902-2162
Shanmugapriya Sothiselvam *Center for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, USA.
Lars V Bock *Theoretical and Computational Biophysics Department, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany. lbock@mpibpc.mpg.de.ORCID 0000-0003-4554-7336
Maxim S SvetlovCenter for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, USA.
Michael GrafInstitute for Biochemistry and Molecular Biology, University of Hamburg, Hamburg, Germany.
Stefan ArenzInstitute for Biochemistry and Molecular Biology, University of Hamburg, Hamburg, Germany.
Maha AbdelshahidInstitute for Biochemistry and Molecular Biology, University of Hamburg, Hamburg, Germany.
Britta SeipUniv. Bordeaux, Centre National de la Recherche Scientifique, Institut National de la Santé et de la Recherche Médicale, ARNA, UMR 5320, U1212, Institut Européen de Chimie et Biologie, Pessac, France.ORCID 0000-0003-1639-3737
Helmut GrubmüllerTheoretical and Computational Biophysics Department, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.ORCID 0000-0002-3270-3144
Alexander S MankinCenter for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, USA.ORCID 0000-0002-3301-827X
C Axel InnisUniv. Bordeaux, Centre National de la Recherche Scientifique, Institut National de la Santé et de la Recherche Médicale, ARNA, UMR 5320, U1212, Institut Européen de Chimie et Biologie, Pessac, France. axel.innis@inserm.fr.ORCID 0000-0003-3153-9490
Nora Vázquez-LaslopCenter for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL, USA. nvazquez@uic.edu.ORCID 0000-0003-2256-693X
Daniel N WilsonInstitute for Biochemistry and Molecular Biology, University of Hamburg, Hamburg, Germany. daniel.wilson@chemie.uni-hamburg.de.ORCID 0000-0003-3816-3828
Universität Hamburg · DEUniversity of Illinois Chicago · USUniversité de Bordeaux · FRMax Planck Institute for Biophysical Chemistry · DE

Funding

Unraveling context specificity of translation by elucidating the mechanism of action of auxiliary translation factorsR35GM127134 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI ALEXANDER S MANKIN · 2018 to 2026
$3.2M
NIGMS NIH HHS R35 GM127134
6 · The paper itself

Abstract

Macrolides and ketolides comprise a family of clinically important antibiotics that inhibit protein synthesis by binding within the exit tunnel of the bacterial ribosome. While these antibiotics are known to interrupt translation at specific sequence motifs, with ketolides predominantly stalling at Arg/Lys-X-Arg/Lys motifs and macrolides displaying a broader specificity, a structural basis for their context-specific action has been lacking. Here, we present structures of ribosomes arrested during the synthesis of an Arg-Leu-Arg sequence by the macrolide erythromycin (ERY) and the ketolide telithromycin (TEL). Together with deep mutagenesis and molecular dynamics simulations, the structures reveal how ERY and TEL interplay with the Arg-Leu-Arg motif to induce translational arrest and illuminate the basis for the less stringent sequence-specific action of ERY over TEL. Because programmed stalling at the Arg/Lys-X-Arg/Lys motifs is used to activate expression of antibiotic resistance genes, our study also provides important insights for future development of improved macrolide antibiotics.

Indexed as

Amino Acid MotifsAmino Acid SequenceAnti-Bacterial AgentsBacillus subtilisBinding SitesCryoelectron MicroscopyDrug Resistance, MicrobialErythromycinGenes, BacterialKetolidesMacrolidesMethyltransferasesMolecular Dynamics SimulationMutagenesis, InsertionalProtein BiosynthesisProtein Synthesis InhibitorsAnti-Bacterial AgentsErythromycinKetolidesMacrolidesMethyltransferasesProtein Synthesis InhibitorsrRNA (adenosine-O-2'-)methyltransferasetelithromycin

Identifiers

PMID34294725
PMCPMC8298421
OpenAlexW3185731068

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.