Evidence map›Paper›PMID 34293906›Full record

ArticleThe Journal of chemical physics2021

Diffusive barrier crossing rates from variationally determined eigenvalues.

Alexander M Berezhkovskii, Irina V Gopich, Attila Szabo

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Article in The Journal of chemical physics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

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1citing papers in PubMed
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1 · What the graph read from it

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3 · Its place in the literature

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1 citing paper in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

3 authors.

Alexander M BerezhkovskiiMathematical and Statistical Computing Laboratory, Office of Intramural Research, Center for Information Technology, National Institutes of Health, Bethesda, Maryland 20892, USA.ORCID 0000000205640408
Irina V GopichLaboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland 208192, USA.ORCID 0000000248908419
Attila SzaboLaboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland 208192, USA.

Funding

Theoretical Studies On The Dynamic Aspects Of Macromolecular FunctionZIADK029019 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI SZABO, ATTILA · 2009 to 2024
$15.0M
Modeling of kinetic processes in biological systemsZIACT000273 · CIT · CENTER FOR INFORMATION TECHNOLOGY · PI BEREZHKOVSKII, ALEXANDER · 2009 to 2021
$2.1M
6 · The paper itself

Abstract

Kramers' procedure for calculating the rate of activated processes involves partitioning space into reactant, barrier, and product regions by introducing two dividing surfaces. Then, a nonequilibrium steady state is established by injecting particles on one surface and removing them when they reach the other. The rate is obtained as the ratio of the steady-state flux between the surfaces and the population of the initial well. An alternative procedure that seems less artificial is to estimate the first non-zero eigenvalue of the operator that describes the dynamics and then equate its magnitude to the sum of the forward and backward rate constants. Here, we establish the relationship between these approaches for diffusive dynamics, starting with the variational principle for the eigenvalue of interest and then using a trial function involving two adjustable surfaces. We show how Kramers' flux-over-population expression for the rate constant can be obtained from our variationally determined eigenvalue in the special case where the reactant and product regions are separated by a high barrier. This work exploits the modern theory of activated rate processes where the committor (the probability of reaching one dividing surface before the other) plays a central role. Surprisingly, our upper bound for the eigenvalue can be expressed solely in terms of mean first-passage times and the mean transition-path time between the two dividing surfaces.

Identifiers

PMID34293906
PMCPMC8411888

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