Evidence map›Paper›PMID 34293321›Full record

ArticleMolecular cell2021

Proteome plasticity in response to persistent environmental change.

Matthew Domnauer, Fan Zheng, Liying Li, Yanxiao Zhang, Catherine E Chang, Jay R Unruh, Juliana Conkright-Fincham, Scott McCroskey, Laurence Florens, Ying Zhang and 7 more

Abstract read
In one paragraph

Article in Molecular cell, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Moonlighting enzymes: when cellular context defines specificity.Cellular and molecular life sciences : CMLS · 2023
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Matthew DomnauerBuck Institute for Research on Aging, 8001 Redwood Blvd., Novato, CA 94945, USA; USC Leonard Davis School of Gerontology, University of Southern California, 3715 McClintock Ave., Los Angeles, CA 90191, USA.
Fan ZhengBuck Institute for Research on Aging, 8001 Redwood Blvd., Novato, CA 94945, USA.
Liying LiUCSF, 1550 Fourth St, RH490 San Francisco, CA 94158, USA.
Yanxiao ZhangLudwig Institute for Cancer Research, 9500 Gilman Dr., La Jolla, CA 92093, USA.
Catherine E ChangBuck Institute for Research on Aging, 8001 Redwood Blvd., Novato, CA 94945, USA.
Jay R UnruhStowers Institute for Medical Research, 1000 East 50th Street, Kansas City, MO 64110, USA.
Juliana Conkright-FinchamStowers Institute for Medical Research, 1000 East 50th Street, Kansas City, MO 64110, USA.
Scott McCroskeyStowers Institute for Medical Research, 1000 East 50th Street, Kansas City, MO 64110, USA.
Laurence FlorensStowers Institute for Medical Research, 1000 East 50th Street, Kansas City, MO 64110, USA.
Ying ZhangStowers Institute for Medical Research, 1000 East 50th Street, Kansas City, MO 64110, USA.
Christopher SeidelStowers Institute for Medical Research, 1000 East 50th Street, Kansas City, MO 64110, USA.
Benjamin FongBuck Institute for Research on Aging, 8001 Redwood Blvd., Novato, CA 94945, USA.
Birgit SchillingBuck Institute for Research on Aging, 8001 Redwood Blvd., Novato, CA 94945, USA; USC Leonard Davis School of Gerontology, University of Southern California, 3715 McClintock Ave., Los Angeles, CA 90191, USA.
Rishi SharmaBuck Institute for Research on Aging, 8001 Redwood Blvd., Novato, CA 94945, USA.
Arvind RamanathanBuck Institute for Research on Aging, 8001 Redwood Blvd., Novato, CA 94945, USA; Institute for Stem Cell Science and Regenerative Medicine GKVK, Bengaluru, Karnataka 560065, India.
Kausik SiStowers Institute for Medical Research, 1000 East 50th Street, Kansas City, MO 64110, USA; Department of Molecular and Integrative Physiology, University of Kansas Medical Center, Kansas City, KS 66160, USA. Electronic address: ksi@stowers.org.
Chuankai ZhouBuck Institute for Research on Aging, 8001 Redwood Blvd., Novato, CA 94945, USA; USC Leonard Davis School of Gerontology, University of Southern California, 3715 McClintock Ave., Los Angeles, CA 90191, USA. Electronic address: kzhou@buckinstitute.org.

Funding

USC Geroscience Training in the Biology of AgingT32AG052374 · NIA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Sean P CURRAN · 2016 to 2026
$5.3M
Mechanism of organelle dysfunction during aging and the related rejuvenation processDP5OD024598 · OD · BUCK INSTITUTE FOR RESEARCH ON AGING · PI ZHOU, CHUANKAI · 2017 to 2021
$2.4M
TripleTOF 5600 High Resolution Mass SpectrometerS10OD016281 · OD · BUCK INSTITUTE FOR RESEARCH ON AGING · PI GIBSON, BRADFORD WAYNE · 2013 to 2013
$597k
NIA NIH HHS T32 AG052374NIH HHS DP5 OD024598NIH HHS S10 OD016281
6 · The paper itself

Abstract

Temperature is a variable component of the environment, and all organisms must deal with or adapt to temperature change. Acute temperature change activates cellular stress responses, resulting in refolding or removal of damaged proteins. However, how organisms adapt to long-term temperature change remains largely unexplored. Here we report that budding yeast responds to long-term high temperature challenge by switching from chaperone induction to reduction of temperature-sensitive proteins and re-localizing a portion of its proteome. Surprisingly, we also find that many proteins adopt an alternative conformation. Using Fet3p as an example, we find that the temperature-dependent conformational difference is accompanied by distinct thermostability, subcellular localization, and, importantly, cellular functions. We postulate that, in addition to the known mechanisms of adaptation, conformational plasticity allows some polypeptides to acquire new biophysical properties and functions when environmental change endures.

Indexed as

AcclimatizationAdaptation, PhysiologicalAnimalsEnvironmental ExposureGene Expression Regulation, FungalHot TemperatureProteomeSaccharomycetalesStress, PhysiologicalTranscriptomeProteomeenvironmental stressFet3machine learningmoonlighting functionsprotein conformation changesthermal acclimation

Identifiers

PMID34293321
PMCPMC8475771

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.