Evidence map›Paper›PMID 34292153›Full record

ArticleeLife2021

Topography and motion of acid-sensing ion channel intracellular domains.

Tyler Couch, Kyle D Berger, Dana L Kneisley, Tyler W McCullock, Paul Kammermeier, David M Maclean

Open access · goldAbstract read
In one paragraph

Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Progress on functions of intracellular domainZhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences · 2024
    Review
  4. Structural basis for excitatory neuropeptide signaling.Nature structural & molecular biology · 2024
    Article
  5. Article
  6. Photomodulation of the ASIC1a acidic pocket destabilizes the open state.Protein science : a publication of the Protein Society · 2023
    Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Tyler CouchGraduate Program in Cellular and Molecular Pharmacology and Physiology, Reno, United States.
Kyle D BergerDepartment of Pharmacology and Physiology, University of Rochester Medical Center, New York, United States.
Dana L KneisleyDepartment of Pharmacology and Physiology, University of Rochester Medical Center, New York, United States.
Tyler W McCullockGraduate Program in Cellular and Molecular Pharmacology and Physiology, Reno, United States.ORCID http://orcid.org/0000-0003-1628-1102
Paul KammermeierDepartment of Pharmacology and Physiology, University of Rochester Medical Center, New York, United States.
David M MacleanDepartment of Pharmacology and Physiology, University of Rochester Medical Center, New York, United States.ORCID https://orcid.org/0000-0001-8294-6075
University of Rochester Medical Center · USCellular Research (United States) · US

Funding

Acid-Sensing Ion Channel gating: Conformations and ConsequencesR35GM137951 · NIGMS · UNIVERSITY OF ROCHESTER · PI David Malcolm MacLean · 2020 to 2026
$2.8M
NIGMS NIH HHS R35 GM137951
6 · The paper itself

Abstract

Acid-sensing ion channels (ASICs) are trimeric cation-selective channels activated by decreases in extracellular pH. The intracellular N and C terminal tails of ASIC1 influence channel gating, trafficking, and signaling in ischemic cell death. Despite several X-ray and cryo-EM structures of the extracellular and transmembrane segments of ASIC1, these important intracellular tails remain unresolved. Here, we describe the coarse topography of the chicken ASIC1 intracellular domains determined by fluorescence resonance energy transfer (FRET), measured using either fluorescent lifetime imaging or patch clamp fluorometry. We find the C terminal tail projects into the cytosol by approximately 35 Å and that the N and C tails from the same subunits are closer than adjacent subunits. Using pH-insensitive fluorescent proteins, we fail to detect any relative movement between the N and C tails upon extracellular acidification but do observe axial motions of the membrane proximal segments toward the plasma membrane. Taken together, our study furnishes a coarse topographic map of the ASIC intracellular domains while providing directionality and context to intracellular conformational changes induced by extracellular acidification.

Indexed as

Acid Sensing Ion ChannelsAmino Acid MotifsAnimalsCell MembraneChickensFluorescence Resonance Energy TransferHEK293 CellsHumansHydrogen-Ion ConcentrationIon Channel GatingAcid Sensing Ion ChannelsASICDPAfluorescenceFRETgatingmolecular biophysicsneurosciencenonepatch clamp fluorometrystructural biology

Identifiers

PMID34292153
PMCPMC8341984
OpenAlexW3183158762

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.