Evidence map›Paper›PMID 34291354›Full record

ArticlePlanta2021

Transcriptome analysis identifies putative genes involved in triterpenoid biosynthesis in Platycodon grandiflorus.

Hanwen Yu, Mengli Liu, Minzhen Yin, Tingyu Shan, Huasheng Peng, Jutao Wang, Xiangwei Chang, Daiyin Peng, Liangping Zha, Shuangying Gui

Abstract read
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In one paragraph

Article in Planta, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 33 citations in OpenAlex.

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  10. Enhancing Centelloside Production inPlants (Basel, Switzerland) · 2023
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  12. De Novo Transcriptome Sequencing ofInternational journal of molecular sciences · 2023
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  18. Review
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Hanwen Yu *College of Pharmacy, Anhui University of Chinese Medicine, Hefei, 230012, China.
Mengli Liu *College of Pharmacy, Anhui University of Chinese Medicine, Hefei, 230012, China.
Minzhen YinCollege of Pharmacy, Anhui University of Chinese Medicine, Hefei, 230012, China.
Tingyu ShanCollege of Pharmacy, Anhui University of Chinese Medicine, Hefei, 230012, China.
Huasheng PengCollege of Pharmacy, Anhui University of Chinese Medicine, Hefei, 230012, China.
Jutao WangCollege of Pharmacy, Anhui University of Chinese Medicine, Hefei, 230012, China.
Xiangwei ChangCollege of Pharmacy, Anhui University of Chinese Medicine, Hefei, 230012, China.
Daiyin PengCollege of Pharmacy, Anhui University of Chinese Medicine, Hefei, 230012, China.
Liangping ZhaCollege of Pharmacy, Anhui University of Chinese Medicine, Hefei, 230012, China. zlp_ahtcm@126.com.ORCID http://orcid.org/0000-0002-4644-5852
Shuangying GuiCollege of Pharmacy, Anhui University of Chinese Medicine, Hefei, 230012, China. guishy0520@126.com.
Anhui University of Traditional Chinese Medicine · CNChinese Academy of Medical Sciences & Peking Union Medical College · CN

Funding

Innovative Research Group Project of the National Natural Science Foundation of China 81773853Innovative Research Group Project of the National Natural Science Foundation of China 82073957The CAMS Innovation Fund for Medical Sciences 2019-I2M-5-065The Key Project at the Central Government Level: The Ability Establishment of Sustainable Use for ValuableChinese Medicine Resources 2060302The Major scientific and technological projects in Anhui Province 18030801128The Special Fundfor Guiding Local Science and Technology Development YDZX20183400004233University Natural Science Research Project of Anhui Province 1808085QH290
6 · The paper itself

Abstract

MAIN

conclusionComprehensive transcriptome analysis of different Platycodon grandiflorus tissues discovered genes related to triterpenoid saponin biosynthesis. Platycodon grandiflorus (Jacq.) A. DC. (P. grandiflorus), a traditional Chinese medicine, contains considerable triterpenoid saponins with broad pharmacological activities. Triterpenoid saponins are the major components of P. grandiflorus. Here, single-molecule real-time and next-generation sequencing technologies were combined to comprehensively analyse the transcriptome and identify genes involved in triterpenoid saponin biosynthesis in P. grandiflorus. We quantified four saponins in P. grandiflorus and found that their total content was highest in the roots and lowest in the stems and leaves. A total of 173,354 non-redundant transcripts were generated from the PacBio platform, and three full-length transcripts of β-amyrin synthase, the key synthase of β-amyrin, were identified. A total of 132,610 clean reads obtained from the DNBSEQ platform were utilised to explore key genes related to the triterpenoid saponin biosynthetic pathway in P. grandiflorus, and 96 differentially expressed genes were selected as candidates. The expression levels of these genes were verified by quantitative real-time PCR. Our reliable transcriptome data provide valuable information on the related biosynthesis pathway and may provide insights into the molecular mechanisms of triterpenoid saponin biosynthesis in P. grandiflorus.

Indexed as

PlatycodonSaponinsTriterpenesGene Expression ProfilingTranscriptomeSaponinsTriterpenesDifferentially expressed genesFull-length transcriptomeRNA-SeqSMRT sequencingTriterpenoid saponin biosynthesis

Identifiers

PMID34291354
OpenAlexW3185230181

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.