Evidence map›Paper›PMID 34290235›Full record

ArticleNature communications2021

Reactivation of a developmentally silenced embryonic globin gene.

Andrew J King, Duantida Songdej, Damien J Downes, Robert A Beagrie, Siyu Liu, Megan Buckley, Peng Hua, Maria C Suciu, A Marieke Oudelaar, Lars L P Hanssen and 16 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Mechanisms of Globin Gene Regulation in Mammals.Annual review of genetics · 2025
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. MYB represses ζ-globin expression through upregulating ETO2.Acta biochimica et biophysica Sinica · 2025
    Article
  13. Efficient andMolecular therapy. Nucleic acids · 2024
    Article
  14. Review
  15. Article
  16. Article
  17. Transcriptional Repressor BCL11A in Erythroid Cells.Advances in experimental medicine and biology · 2024
    Review
  18. Article
  19. Ancient genomic linkage couples metabolism with erythroid development.bioRxiv : the preprint server for biology · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 7 institutions in 5 countries.

Andrew J King *MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Duantida Songdej *MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.ORCID 0000-0002-5750-7211
Damien J DownesMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.ORCID 0000-0002-5034-0869
Robert A BeagrieMRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.ORCID 0000-0003-1076-5595
Siyu LiuMRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Megan BuckleyMRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.ORCID 0000-0003-4450-8474
Peng HuaMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.ORCID 0000-0003-3774-5033
Maria C SuciuMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
A Marieke OudelaarMax Planck Institute for Biophysical Chemistry, Göttingen, Germany.ORCID 0000-0002-4016-6158
Lars L P HanssenMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Danuta JeziorskaMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Nigel RobertsMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.ORCID 0000-0002-5091-3604
Stephanie J CarpenterMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Helena FrancisMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.ORCID 0000-0002-0184-7890
Jelena TeleniusMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Aude-Anais OlijnikMRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Jacqueline A SharpeMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Jacqueline Sloane-StanleyMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Jennifer EglintonNational Haemoglobinopathy Reference Laboratory, Department of Haematology, Level 4, John Radcliffe Hospital, Oxford, UK.
Mira T KassoufMRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Stuart H OrkinDana-Farber/Boston Children's Cancer and Blood Disorders Center, Harvard Medical School and Howard Hughes Medical Institute, Boston, MA, USA.ORCID 0000-0002-0313-152X
Len A PennacchioFunctional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID 0000-0002-8748-3732
James O J DaviesMRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Jim R HughesMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.ORCID 0000-0002-8955-7256
Douglas R HiggsMRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK. doug.higgs@imm.ox.ac.uk.ORCID 0000-0003-3579-8705
Christian BabbsMRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK. christian.babbs@imm.ox.ac.uk.ORCID 0000-0002-1898-5878
University of Oxford · GBChinese Academy of Medical Sciences & Peking Union Medical College · CNHoward Hughes Medical Institute · USJohn Radcliffe Hospital · GBLawrence Berkeley National Laboratory · USMahidol University · THMax Planck Institute for Biophysical Chemistry · DE

Funding

Generation of an In Vivo Human Genome Transcriptional Enhancer DatasetR01HG003988 · NHGRI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI Len Alexander Pennacchio · 2006 to 2026
$24.1M
MOLECULAR ANALYSIS OF NORMAL AND TYHALASSEMIC DNAR01HL032259 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI ORKIN, STUART H · 1985 to 2022
$8.8M
Medical Research Council MC_UU_00016/1Medical Research Council MC_UU_00016/14Medical Research Council MC_UU_00016/4Medical Research Council MC_UU_12009Medical Research Council MR/N00969X/1Medical Research Council MR/R008108/1Medical Research Council MR/T014067/1NHGRI NIH HHS R01 HG003988NHLBI NIH HHS R01 HL032259Wellcome Trust 106130/Z/14/ZWellcome Trust 108785/Z/15/ZWellcome Trust 209181/Z/17/Z
6 · The paper itself

Abstract

The α- and β-globin loci harbor developmentally expressed genes, which are silenced throughout post-natal life. Reactivation of these genes may offer therapeutic approaches for the hemoglobinopathies, the most common single gene disorders. Here, we address mechanisms regulating the embryonically expressed α-like globin, termed ζ-globin. We show that in embryonic erythroid cells, the ζ-gene lies within a ~65 kb sub-TAD (topologically associating domain) of open, acetylated chromatin and interacts with the α-globin super-enhancer. By contrast, in adult erythroid cells, the ζ-gene is packaged within a small (~10 kb) sub-domain of hypoacetylated, facultative heterochromatin within the acetylated sub-TAD and that it no longer interacts with its enhancers. The ζ-gene can be partially re-activated by acetylation and inhibition of histone de-acetylases. In addition to suggesting therapies for severe α-thalassemia, these findings illustrate the general principles by which reactivation of developmental genes may rescue abnormalities arising from mutations in their adult paralogues.

Indexed as

Gene Expression Regulation, DevelopmentalGene SilencingTranscriptional ActivationAcetylationalpha-GlobinsAnimalsChromatinDNA-Binding ProteinsEnhancer Elements, GeneticErythroid CellsHistone Deacetylase InhibitorsHumansMiceRepressor ProteinsTranscription Factorszeta-Globinsalpha-GlobinsBCL11A protein, humanChromatinDNA-Binding ProteinsHistone Deacetylase InhibitorsRepressor ProteinsTranscription FactorsZBTB7A protein, humanzeta-Globins

Identifiers

PMID34290235
PMCPMC8295333
OpenAlexW3184975337

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.