Evidence map›Paper›PMID 34289357›Full record

ArticleCell reports2021

Heterogeneity of neurons reprogrammed from spinal cord astrocytes by the proneural factors Ascl1 and Neurogenin2.

J Kempf, K Knelles, B A Hersbach, D Petrik, T Riedemann, V Bednarova, A Janjic, T Simon-Ebert, W Enard, P Smialowski and 2 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Cell reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 43 citations in OpenAlex.

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  19. Circuit formation in the adult brain.The European journal of neuroscience · 2022
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

J KempfBiomedical Center Munich, Physiological Genomics, LMU Munich, Planegg-Martinsried 82152, Germany.
K KnellesBiomedical Center Munich, Physiological Genomics, LMU Munich, Planegg-Martinsried 82152, Germany.
B A HersbachBiomedical Center Munich, Physiological Genomics, LMU Munich, Planegg-Martinsried 82152, Germany; Institute for Stem Cell Research, Helmholtz Center Munich, Neuherberg 85764, Germany; Graduate School of Systemic Neurosciences, LMU Munich, Planegg-Martinsried 82152, Germany.
D PetrikBiomedical Center Munich, Physiological Genomics, LMU Munich, Planegg-Martinsried 82152, Germany; Institute for Stem Cell Research, Helmholtz Center Munich, Neuherberg 85764, Germany; School of Biosciences, The Sir Martin Evans Building, Cardiff University, CF10 3AX Cardiff, UK.
T RiedemannBiomedical Center Munich, Physiological Genomics, LMU Munich, Planegg-Martinsried 82152, Germany.
V BednarovaBiomedical Center Munich, Physiological Genomics, LMU Munich, Planegg-Martinsried 82152, Germany.
A JanjicAnthropology and Human Genomics, Faculty of Biology, LMU Munich, Planegg-Martinsried 82152, Germany.
T Simon-EbertBiomedical Center Munich, Physiological Genomics, LMU Munich, Planegg-Martinsried 82152, Germany.
W EnardBiomedical Center Munich, Bioinformatic Core Facility, LMU Munich, Planegg-Martinsried 82152, Germany.
P SmialowskiBiomedical Center Munich, Physiological Genomics, LMU Munich, Planegg-Martinsried 82152, Germany; Institute for Stem Cell Research, Helmholtz Center Munich, Neuherberg 85764, Germany; School of Biosciences, The Sir Martin Evans Building, Cardiff University, CF10 3AX Cardiff, UK.
M GötzBiomedical Center Munich, Physiological Genomics, LMU Munich, Planegg-Martinsried 82152, Germany; Institute for Stem Cell Research, Helmholtz Center Munich, Neuherberg 85764, Germany; Excellence Cluster of Systems Neurology (SYNERGY), Munich, Germany. Electronic address: magdalena.goetz@helmholtz-muenchen.de.
G MasserdottiBiomedical Center Munich, Physiological Genomics, LMU Munich, Planegg-Martinsried 82152, Germany; Institute for Stem Cell Research, Helmholtz Center Munich, Neuherberg 85764, Germany. Electronic address: giacomo.masserdotti@helmholtz-muenchen.de.
Urologische Klinik München · DEHelmholtz Zentrum München · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Astrocytes are a viable source for generating new neurons via direct conversion. However, little is known about the neurogenic cascades triggered in astrocytes from different regions of the CNS. Here, we examine the transcriptome induced by the proneural factors Ascl1 and Neurog2 in spinal cord-derived astrocytes in vitro. Each factor initially elicits different neurogenic programs that later converge to a V2 interneuron-like state. Intriguingly, patch sequencing (patch-seq) shows no overall correlation between functional properties and the transcriptome of the heterogenous induced neurons, except for K-channels. For example, some neurons with fully mature electrophysiological properties still express astrocyte genes, thus calling for careful molecular and functional analysis. Comparing the transcriptomes of spinal cord- and cerebral-cortex-derived astrocytes reveals profound differences, including developmental patterning cues maintained in vitro. These relate to the distinct neuronal identity elicited by Ascl1 and Neurog2 reflecting their developmental functions in subtype specification of the respective CNS region.

Indexed as

Cellular ReprogrammingAnimalsAstrocytesBasic Helix-Loop-Helix ProteinsBiomarkersElectrophysiological PhenomenaMiceMice, Inbred C57BLNerve Tissue ProteinsNeuronsOrgan SpecificitySpinal CordTranscription, GeneticAscl1 protein, mouseBasic Helix-Loop-Helix ProteinsBiomarkersNerve Tissue ProteinsNeurog2 protein, mouseAscl1astrocytesdirect reprogrammingNeurog2patch-seqpatterning genessingle-cell RNA-seqspinal cord

Identifiers

PMID34289357
PMCPMC8316252
OpenAlexW3186684278

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.