Evidence map›Paper›PMID 34288727›Full record

ArticleJournal of clinical microbiology2021

Molecular Epidemiology of Human Sapovirus among Children with Acute Gastroenteritis in Western Canada.

Ran Zhuo, Xiaofeng Ding, Stephen B Freedman, Bonita E Lee, Samina Ali, Jasper Luong, Jianling Xie, Linda Chui, Ying Wu, Xiaoli Pang and 1 more

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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  15. Timing and genotype distribution of symptomatic and asymptomatic sapovirus infections and re-infections in a Nicaraguan birth cohort.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Ran ZhuoDepartment of Laboratory Medicine and Pathology, University of Albertagrid.17089.37, Edmonton, Alberta, Canada.ORCID 0000-0002-0455-3281
Xiaofeng DingDepartment of Laboratory Medicine and Pathology, University of Albertagrid.17089.37, Edmonton, Alberta, Canada.
Stephen B FreedmanSection of Pediatric Emergency Medicine, Department of Pediatrics and Emergency Medicine, Alberta Children's Hospital and Alberta Children's Hospital Research Institute, University of Calgarygrid.22072.35, Cumming School of Medicine, Calgary, Alberta, Canada.
Bonita E LeeDepartment of Pediatrics, University of Albertagrid.17089.37, Edmonton, Alberta, Canada.
Samina AliDepartment of Pediatrics, University of Albertagrid.17089.37, Edmonton, Alberta, Canada.
Jasper LuongDepartment of Laboratory Medicine and Pathology, University of Albertagrid.17089.37, Edmonton, Alberta, Canada.
Jianling XieSection of Pediatric Emergency Medicine, Department of Pediatrics and Emergency Medicine, Alberta Children's Hospital and Alberta Children's Hospital Research Institute, University of Calgarygrid.22072.35, Cumming School of Medicine, Calgary, Alberta, Canada.
Linda ChuiDepartment of Laboratory Medicine and Pathology, University of Albertagrid.17089.37, Edmonton, Alberta, Canada.ORCID 0000-0003-0851-9803
Ying WuDepartment of Laboratory Medicine and Pathology, University of Albertagrid.17089.37, Edmonton, Alberta, Canada.
Xiaoli PangDepartment of Laboratory Medicine and Pathology, University of Albertagrid.17089.37, Edmonton, Alberta, Canada.ORCID 0000-0002-5520-1083
Alberta Provincial Pediatric EnTeric Infection TEam (APPETITE)

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sapovirus is increasingly recognized as an important cause of acute gastroenteritis (AGE) worldwide; however, studies of sapovirus prevalence, genetic diversity, and strain-specific clinical implications have been scarce. To fill this knowledge gap, we used reverse transcription-real-time PCR and sequencing of the partial major capsid protein VP1 gene to analyze stool specimens and rectal swabs obtained from 3,347 children with AGE and 1,355 asymptomatic controls (all <18 years old) collected between December 2014 and August 2018 in Alberta, Canada. Sapovirus was identified in 9.5% (317/3347) of the children with AGE and 2.9% of controls. GI.1 (36%) was the predominant genotype identified, followed by GI.2 (18%), GII.5 (8%), and GII.3 (6%). Rare genotypes GII.1, GII.2, GV.1, GII.4, GIV.1, GI.3, and GI.7 were also seen. Sapovirus was detected year-round, peaking during the winter months of November to January. The exception was the 2016-2017 season, when GI.2 overtook GI.1 as the predominant strain, with a high detection rate persisting into April. We did not observe significant difference in the severity of gastroenteritis by genogroup or genotype. Repeated infection by sapovirus of different genogroups occurred in three controls who developed AGE later. Our data suggest that sapovirus is a common cause of AGE in children with high genetic diversity.

Indexed as

Caliciviridae InfectionsGastroenteritisSapovirusAdolescentAlbertaChildChild, PreschoolFecesGenetic VariationGenotypeHumansMolecular EpidemiologyPhylogenygenotypepediatric gastroenteritisrepeated infectionsapovirusseasonality

Identifiers

PMID34288727
PMCPMC8451440

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.