Evidence map›Paper›PMID 34288650›Full record

ArticleACS synthetic biology2021

High-Throughput Transcriptional Characterization of Regulatory Sequences from Bacterial Biosynthetic Gene Clusters.

Jimin Park, Sung Sun Yim, Harris H Wang

Abstract read
In one paragraph

Article in ACS synthetic biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Natural product reports · 2023
    Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Jimin ParkDepartment of Systems Biology, Columbia University Irving Medical Center, New York, New York 10032, United States.ORCID 0000-0001-9320-1386
Sung Sun YimDepartment of Systems Biology, Columbia University Irving Medical Center, New York, New York 10032, United States.ORCID 0000-0001-5060-0344
Harris H WangDepartment of Systems Biology, Columbia University Irving Medical Center, New York, New York 10032, United States.ORCID 0000-0003-2164-4318

Funding

A minimally invasive synthetic bio-driven approach for natural products discoveryU01GM110714 · NIGMS · ROCKEFELLER UNIVERSITY · PI BRADY, SEAN F · 2015 to 2019
$11.1M
NIGMS NIH HHS U01 GM110714
6 · The paper itself

Abstract

Recent efforts to sequence, survey, and functionally characterize the diverse biosynthetic capabilities of bacteria have identified numerous Biosynthetic Gene Clusters (BGCs). Genes found within BGCs are typically transcriptionally silent, suggesting their expression is tightly regulated. To better elucidate the underlying mechanisms and principles that govern BGC regulation on a DNA sequence level, we employed high-throughput DNA synthesis and multiplexed reporter assays to build and to characterize a library of BGC-derived regulatory sequences. Regulatory sequence transcription levels were measured in the Actinobacteria

Indexed as

Bacterial ProteinsDNA, BacterialNucleotide MotifsRegulatory Sequences, Nucleic AcidStreptomycesTranscription, GeneticGene LibraryMycobacterium bovisBacterial ProteinsDNA, Bacterialbiosynthetic gene clusterscell-free expression systemsoligonucleotide library synthesisregulatory sequencesStreptomycessynthetic biology

Identifiers

PMID34288650
PMCPMC12038827

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.