Evidence map›Paper›PMID 34288588›Full record

ArticleCurrent protocols2021

Photocrosslinking O-GlcNAcylated Proteins to Neighboring Biomolecules.

Emanuela Capota, Han Wu, Jennifer J Kohler

Abstract read
In one paragraph

Article in Current protocols, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Synthesis of Cell-PermeableThe Journal of organic chemistry · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Emanuela CapotaDepartment of Biochemistry, UT Southwestern Medical Center, Dallas, Texas.
Han WuDepartment of Biochemistry, UT Southwestern Medical Center, Dallas, Texas.
Jennifer J KohlerDepartment of Biochemistry, UT Southwestern Medical Center, Dallas, Texas.

Funding

New tools for studying GlcNAc biologyU01CA242115 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI KOHLER, JENNIFER J · 2019 to 2021
$1.5M
NCI NIH HHS U01 CA242115NIH HHS U01CA242115Welch Foundation I-1686
6 · The paper itself

Abstract

This protocol enables identification of the interaction partners of O-GlcNAcylated proteins. The method involves the introduction of the diazirine photocrosslinker onto the O-GlcNAc modification within living cells. The photocrosslinker is activated by UV light to yield covalent crosslinking between O-GlcNAcylated proteins and neighboring molecules. The binding partners can be further characterized by immunoblot or proteomics mass spectrometry methods. The benefits of using the photocrosslinker include the capacity to trap low-affinity binding interactions and the ability to selectively target the interaction partners of the O-GlcNAcylated form of the protein of interest. © 2021 Wiley Periodicals LLC. Basic Protocol 1: In-cell production and crosslinking of O-GlcNDAzylated proteins Basic Protocol 2: Immunoblot analysis to assess O-GlcNDAz crosslinking Support Protocol: Detection of UDP-GlcNDAz from cell lysates.

Indexed as

AcetylglucosamineProtein Processing, Post-TranslationalDiazomethaneMass SpectrometryProteinsAcetylglucosamineDiazomethaneProteinsdiazirineglycosylationmetabolic labelingO-GlcNAcphotocrosslinking

Identifiers

PMID34288588
PMCPMC8299865

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.