Evidence map›Paper›PMID 34288352›Full record

ArticleEnvironmental microbiology2021

Bacteria associated with wood tissues of Esca-diseased grapevines: functional diversity and synergy with Fomitiporia mediterranea to degrade wood components.

Rana Haidar, Amira Yacoub, Jessica Vallance, Stéphane Compant, Livio Antonielli, Ahmad Saad, Birgit Habenstein, Brice Kauffmann, Axelle Grélard, Antoine Loquet and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Environmental microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 35 citations in OpenAlex.

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  19. Grapevine Wood-Degrading Activity ofFrontiers in microbiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Rana HaidarINRAE, UMR SAVE, Bordeaux Science Agro, ISVV, University of Bordeaux, Villenave d'Ornon, 33882, France.ORCID 0000-0001-8534-9532
Amira YacoubINRAE, UMR SAVE, Bordeaux Science Agro, ISVV, University of Bordeaux, Villenave d'Ornon, 33882, France.
Jessica VallanceINRAE, UMR SAVE, Bordeaux Science Agro, ISVV, University of Bordeaux, Villenave d'Ornon, 33882, France.
Stéphane CompantAIT Austrian Institute of Technology GmbH, Bioresources Unit, Center for Health and Bioresources, Konrad Lorenz Straße 24, Tulln, 3430, Austria.
Livio AntonielliAIT Austrian Institute of Technology GmbH, Bioresources Unit, Center for Health and Bioresources, Konrad Lorenz Straße 24, Tulln, 3430, Austria.
Ahmad SaadInstitut de Chimie et Biologie des Membranes et des Nanoobjets, IECB, CNRS, Université de Bordeaux, Pessac, 33607, France.
Birgit HabensteinInstitut de Chimie et Biologie des Membranes et des Nanoobjets, IECB, CNRS, Université de Bordeaux, Pessac, 33607, France.
Brice KauffmannIECB, UMS 3033, US001, CNRS, Université de Bordeaux, Pessac, 33607, France.
Axelle GrélardInstitut de Chimie et Biologie des Membranes et des Nanoobjets, IECB, CNRS, Université de Bordeaux, Pessac, 33607, France.
Antoine LoquetInstitut de Chimie et Biologie des Membranes et des Nanoobjets, IECB, CNRS, Université de Bordeaux, Pessac, 33607, France.
Eléonore AttardUniversité de Pau et des Pays de l'Adour/E2S UPPA/CNRS, Institut des Sciences Analytiques et de Physicochimie pour l'Environnement et les Matériaux - UMR 5254, IBEAS Avenue de l'Université, Pau, 64013, France.
Rémy GuyoneaudUniversité de Pau et des Pays de l'Adour/E2S UPPA/CNRS, Institut des Sciences Analytiques et de Physicochimie pour l'Environnement et les Matériaux - UMR 5254, IBEAS Avenue de l'Université, Pau, 64013, France.
Patrice ReyINRAE, UMR SAVE, Bordeaux Science Agro, ISVV, University of Bordeaux, Villenave d'Ornon, 33882, France.
Centre National de la Recherche Scientifique · FRUniversité de Bordeaux · FRAustrian Institute of Technology · ATLatakia University · SY

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fungi are considered to cause grapevine trunk diseases such as esca that result in wood degradation. For instance, the basidiomycete Fomitiporia mediterranea (Fmed) is overabundant in white rot, a key type of wood-necrosis associated with esca. However, many bacteria colonize the grapevine wood too, including the white rot. In this study, we hypothesized that bacteria colonizing grapevine wood interact, possibly synergistically, with Fmed and enhance the fungal ability to degrade wood. We isolated 237 bacterial strains from esca-affected grapevine wood. Most of them belonged to the families Xanthomonadaceae and Pseudomonadaceae. Some bacterial strains that degrade grapevine-wood components such as cellulose and hemicellulose did not inhibit Fmed growth in vitro. We proved that the fungal ability to degrade wood can be strongly influenced by bacteria inhabiting the wood. This was shown with a cellulolytic and xylanolytic strain of the Paenibacillus genus, which displays synergistic interaction with Fmed by enhancing the degradation of wood structures. Genome analysis of this Paenibacillus strain revealed several gene clusters such as those involved in the expression of carbohydrate-active enzymes, xylose utilization and vitamin metabolism. In addition, certain other genetic characteristics of the strain allow it to thrive as an endophyte in grapevine and influence the wood degradation by Fmed. This suggests that there might exist a synergistic interaction between the fungus Fmed and the bacterial strain mentioned above, enhancing grapevine wood degradation. Further step would be to point out its occurrence in mature grapevines to promote esca disease development.

Indexed as

BasidiomycotaVitisBacteriaHumansPlant DiseasesWood

Identifiers

PMID34288352
PMCPMC9291561
OpenAlexW3186871633

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.