Evidence map›Paper›PMID 34287060›Full record

ArticleMicrobiology spectrum2021

Genomic Update of Phenotypic Prediction Rule for Methicillin-Resistant Staphylococcus aureus (MRSA) USA300 Discloses Jail Transmission Networks with Increased Resistance.

Sarah E Sansom, Emily Benedict, Stephanie N Thiede, Bala Hota, Alla Aroutcheva, Darjai Payne, Chad Zawitz, Evan S Snitkin, Stefan J Green, Robert A Weinstein and 1 more

Abstract read
In one paragraph

Article in Microbiology spectrum, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Infection and immunity · 2023
    Article
  4. Correlation Analysis ofInternational journal of clinical practice · 2023
    Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Sarah E SansomDivision of Infectious Diseases, Rush University Medical Centergrid.240684.c/Cook County Health, Chicago, Illinois, USA.ORCID 0000-0002-1924-8941
Emily BenedictDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, USA.
Stephanie N ThiedeDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, USA.
Bala HotaDivision of Infectious Diseases, Rush University Medical Centergrid.240684.c/Cook County Health, Chicago, Illinois, USA.
Alla AroutchevaDivision of Infectious Diseases, Rush University Medical Centergrid.240684.c/Cook County Health, Chicago, Illinois, USA.
Darjai PayneDivision of Infectious Diseases, Rush University Medical Centergrid.240684.c/Cook County Health, Chicago, Illinois, USA.
Chad ZawitzDivision of Infectious Diseases, Cook County Health/Cermak Health Services, Chicago, Illinois, USA.
Evan S SnitkinDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, USA.ORCID 0000-0001-8409-278X
Stefan J GreenDivision of Infectious Diseases, Rush University Medical Centergrid.240684.c/Cook County Health, Chicago, Illinois, USA.
Robert A WeinsteinDivision of Infectious Diseases, Rush University Medical Centergrid.240684.c/Cook County Health, Chicago, Illinois, USA.
Kyle J PopovichDivision of Infectious Diseases, Rush University Medical Centergrid.240684.c/Cook County Health, Chicago, Illinois, USA.

Funding

Genomic Epidemiology of Methicillin-Resistant Staphylococcus aureus in JailR01AI114688 · NIAID · RUSH UNIVERSITY MEDICAL CENTER · PI POPOVICH, KYLE JEANNE · 2015 to 2019
$1.8M
NIAID NIH HHS R01 AI114688
6 · The paper itself

Abstract

Methicillin-resistant Staphylococcus aureus (MRSA) is a leading cause of health care-associated (HA) and community-associated (CA) infections. USA300 strains are historically CA-MRSA, while USA100 strains are HA-MRSA. Here, we update an antibiotic prediction rule to distinguish these two genotypes based on antibiotic resistance phenotype using whole-genome sequencing (WGS), a more discriminatory methodology than pulsed-field gel electrophoresis (PFGE). MRSA clinical isolates collected from 2007 to 2017 underwent WGS; associated epidemiologic data were ascertained. In developing the rule, we examined MRSA isolates that included a population with a history of incarceration. Performance characteristics of antibiotic susceptibility for predicting USA300 compared to USA100, as defined by WGS, were examined. Phylogenetic analysis was performed to examine resistant USA300 clades. We identified 275 isolates (221 USA300, 54 USA100). Combination susceptibility to clindamycin or levofloxacin performed the best overall (sensitivity 80.7%, specificity 75.9%) to identify USA300. The average number of antibiotic classes with resistance was higher for USA100 (3 versus 2,

Indexed as

GenomicsJailsPhenotypeAnti-Bacterial AgentsCommunity-Acquired InfectionsHumansMethicillinMethicillin-Resistant Staphylococcus aureusMicrobial Sensitivity TestsMolecular EpidemiologyMolecular TypingPhylogenyStaphylococcal InfectionsStaphylococcus aureusAnti-Bacterial AgentsMethicillinantibiotic resistancemethicillin resistanceMRSAStaphylococcus aureus

Identifiers

PMID34287060
PMCPMC8552710

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.